Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0336 ATGCATAGCCGAGATAAAGGGCCGATAAAGGAAGGTTATGAGCATTCAAATCATGGAAATCCTCATAAACAGCAGAAGCCTTCTGCTGTTCCTCCAATGCCAGTGAAGAAGCCGAACGGGGTGCAGGGGAGGGTTGAGACAGAAGAAGAGAGGAGGTTAAGGAAGAAGAGAGAATTTGAGAAGCAGAGGCAAGAAGAGAAGCATAGGCAGCAGCTGAAGGAATCACAGAACAGTGTCTTGCAGAAGACTCAGATGATGTCATCTGGGAAGGGGCATGGTTCGGGTTCGGTTGCAGGGTCTCGAATGGCAGCAGAGAAGAGAACTACACCCTTATTGAGTGCGGAGAGAATTGAAAATAGGTTGAAAAAGCCAACAACATTTTTGTGCAAAATGAAATTCCGAAATGAACTTCCAGATCCAAGTGCACAACCTAAGCTTATGGCGTTCAAGAGGGATAAAGATCAATATACGAAATATACAATCACATCGCTGGAGAAAATGTACAAACCCAAACTTTTTGTGGAACCAGATCTTGGGATTCCTCTGGACCTGCTTGACCTCAGTGTTTATAACCCTCCCAGTGTCAGACTACCTCTTGCTCCTGAAGACGAAGATTTGTTGCGAGATGATGTTGCGGCTACTCCTATAAAGAAAGACGGCTTAAAAAGAAAAGACAGGCCTACTGATAAAGGTGTAGCTTGGCTTGTCAAAACACAATATATATCTCCCCTCAGCATGGATTCAACAAAACAGTCTTTAACTGAAAAACAAGCTAAGGAGCTGAGAGAGATGAGAGGAGGCCGCAGCATGTTGGACAGTCGTAACAATAGGTATGCATATACCACAGCTAAGTCACGCCCTGTTCATGCAACCAACAAATCTTTGTATCCTGTTGAGGTTTTGCCTTTGTTACCTGATTTTGATAGGTATGATGAACAGTTTGTTATTGCTGCATTTGATAATGCTCCTACAGCTGATTCAGAAATGTATGGTAAGTTGGACAAATCTGTTCGTGATGCCTGTGAATCAAAGGCACTTATGAAAAGTTATGTTGCAACTGGCTCAGATCCTGCAAATCCTGAGAAATTTTTGGCTTACATGACCCCAACACCTGGACAGCTGTCAAAGGATATATATGATGAAAATGAAGATGTCTCATATTCTTGGGTTCGCGAGTATCACTGGGATGTTCGGGGTGATGATGCAGATGACCCTACAACATTCTTAGTTGCATTTGATGAGTCAGAAGCACGTTATTTGCCTCTTCCAACAAAACTTGTTTTAAGAAAAAAGAGGGCTAAAGAGGGAAGATCAAGTGATGAGGTCGAGCAATTTCCAATACCTGCAAGAGTGACTGTAAGGCGAAGGTCGAATGTTGCAGCAATCGAGCGAAAGGATTCACAGGTTTATACAAGTTCGAAAGCCAGTACTTCAAAGAGAAGGGGTCTAGAAATGGATGATGATCTCGAACAGCATCATCGACACAATTATCAATCTAGTGGAGCTGAAGATGACATGTCTGATTAA 1527 0.4283 MHSRDKGPIKEGYEHSNHGNPHKQQKPSAVPPMPVKKPNGVQGRVETEEERRLRKKREFEKQRQEEKHRQQLKESQNSVLQKTQMMSSGKGHGSGSVAGSRMAAEKRTTPLLSAERIENRLKKPTTFLCKMKFRNELPDPSAQPKLMAFKRDKDQYTKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRLPLAPEDEDLLRDDVAATPIKKDGLKRKDRPTDKGVAWLVKTQYISPLSMDSTKQSLTEKQAKELREMRGGRSMLDSRNNRYAYTTAKSRPVHATNKSLYPVEVLPLLPDFDRYDEQFVIAAFDNAPTADSEMYGKLDKSVRDACESKALMKSYVATGSDPANPEKFLAYMTPTPGQLSKDIYDENEDVSYSWVREYHWDVRGDDADDPTTFLVAFDESEARYLPLPTKLVLRKKRAKEGRSSDEVEQFPIPARVTVRRRSNVAAIERKDSQVYTSSKASTSKRRGLEMDDDLEQHHRHNYQSSGAEDDMSD* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0336 508 PANTHER RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG 105 507 IPR007133 GO:0006368|GO:0016570|GO:0016593
Amo19g0336 508 MobiDBLite consensus disorder prediction 42 73 - -
Amo19g0336 508 Coils Coil 45 65 - -
Amo19g0336 508 MobiDBLite consensus disorder prediction 464 508 - -
Amo19g0336 508 PANTHER RNA POLYMERASE II ASSOCIATED FACTOR PAF1-RELATED 105 507 - -
Amo19g0336 508 MobiDBLite consensus disorder prediction 1 21 - -
Amo19g0336 508 MobiDBLite consensus disorder prediction 479 501 - -
Amo19g0336 508 Pfam Paf1 127 466 IPR007133 GO:0006368|GO:0016570|GO:0016593
Amo19g0336 508 MobiDBLite consensus disorder prediction 464 478 - -
Amo19g0336 508 MobiDBLite consensus disorder prediction 74 94 - -
Amo19g0336 508 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0336 Amo-Chr19 4321907 4325766 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0336 K15174 - gmx:100800148 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0336 19 4321907 4325766 Amo19g0336 19 4321907 4325766 ECH
Amo19g0336 19 4321907 4325766 Amo09g0348 09 3968259 3973856 hybridization