Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0332 ATGGAAAGTTTCGCCGGTGGCGGTGTTAAGGACGTGTACGGCGAGGATAGAGCCACAGAGGATCAGTTTGTGACACCATGGAGTGTTTCTGTTGCTAGTGGGTATACATTGTTGCGAGATCCTCACTTCAATAAAGGATTGGCATTCACTGAACAAGAAAGGGATGCACATTACTTGCGTGGTCTTCTTCCTCCATCAGTTATTTCTCAAGAAACTCAGGTGAAGAGACTCATTCAACTAATACGGCAGTATCAAGTACCATTGCTGAAGTATGTGGCAATGATGGATCTTCAGGAGAGCAATGAAAGGTTGTTTTATAGGCTTCTTATTGATCATGTTGAGGAGTTACTTCCTGTTGTCTACACTCCAACAGTTGGTGAAGCTTGCCAGAAATATGGCAGCATCTTCTCAAATCCTCAAGGTCTTTTTATAAGCTTGAAAGAGAAAGGGAGGATTCTTGAAGTTCTAAGGAATTGGCCTGAGATGAACATTCAAGTCATAGTTGTAACTGATGGAGAAAGGATCTTAGGTCTAGGGGACCTTGGCTGTCAGGGAATGGGAATACCAGTTGGGAAACTTTCTTTATATACAGCACTTGGAGGAGTTCGTCCTTCTGCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGTTGAATGATGAATTATACATTGGTCTAAGGCATAAAAGAGCAACTGGCAAGGAATATGATGAACTTCTGCATGAATTCATGACTGCAGTAAAACAAAATTATGGAGAAAAAATCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAGATATAGGTCAACACATCTTGTTTTCAATGATGATATTCAGGGAACAGCGTCGGTGGTCCTCGCCGGACTTGTCGCGGCCCTGAAATTGGTCGGAGGAAACTTAGCTGATCACAAGTTCCTCTTCCTTGGGGCTGGAGAGGCTGGCACCGGAATAGCAGAACTCATAGCCCTTGAAATATCAAAACGGACAAATATTGAAGTGGAAAAAGCTCGCAAGAACATTTGGTTGGTGGATTCAAAGGGATTGATTGTTAGTTCCAGAAAGGAATCACTTCAACATTTCAAGAAGCCTTGGGCTCATGAACATGAACCTATATCAGATCTGGTCAAAGCAGTTAATCAAATTAAGCCAACAGTATTGATTGGAACATCAGGACAAGGCCAAACTTTTACTCAAGCAGTGGTTGAGGCTATGGCCTCCAATAATGAGAAACCTATTATCCTAGCTCTTTCCAACCCAACATCACAATCAGAATGTACTGCTGAACAAGCTTATAATTGGACTAAGGGACGTGTAATTTTTGCTAGTGGAAGCCCATTTGACCCGGTTGAAATTGATGGGAAGAAACATGTGCCTGGCCAGGCCAATAATGCATACATTTTTCCTGGATTCGGTCTTGGTTTGATAATGTCTGGAACAATCCGAGTTCATGATGACATGCTTCTAGCAGCTTCTGAGGCATTGGCTTCACAGGTGAGCAAAGAGGACTATGAAAAGGGGCTTATATATCCTCCCTTCACTAACATTAGAAAGATTTCAGCAAATATAGCTGCAAATGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTCGACTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACTCCAACCTATAGAAGCTACAGATGA 1722 0.4228 MESFAGGGVKDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFTEQERDAHYLRGLLPPSVISQETQVKRLIQLIRQYQVPLLKYVAMMDLQESNERLFYRLLIDHVEELLPVVYTPTVGEACQKYGSIFSNPQGLFISLKEKGRILEVLRNWPEMNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLRHKRATGKEYDELLHEFMTAVKQNYGEKILVQFEDFANHNAFDLLERYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHKFLFLGAGEAGTGIAELIALEISKRTNIEVEKARKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPISDLVKAVNQIKPTVLIGTSGQGQTFTQAVVEAMASNNEKPIILALSNPTSQSECTAEQAYNWTKGRVIFASGSPFDPVEIDGKKHVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALASQVSKEDYEKGLIYPPFTNIRKISANIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPTYRSYR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0332 573 Gene3D - 287 573 - -
Amo19g0332 573 PRINTS Malic enzyme signature 104 128 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 PRINTS Malic enzyme signature 285 301 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 PRINTS Malic enzyme signature 260 278 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 PRINTS Malic enzyme signature 316 332 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 PRINTS Malic enzyme signature 164 193 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 PRINTS Malic enzyme signature 200 222 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 PRINTS Malic enzyme signature 419 435 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 6 573 - -
Amo19g0332 573 SMART Malic_M_2 289 542 IPR012302 GO:0051287
Amo19g0332 573 Pfam Malic enzyme, NAD binding domain 289 541 IPR012302 GO:0051287
Amo19g0332 573 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 13 288 IPR046346 -
Amo19g0332 573 PIRSF ME 10 573 IPR001891 GO:0004470|GO:0004471
Amo19g0332 573 Gene3D - 32 286 IPR037062 GO:0004471
Amo19g0332 573 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 289 572 IPR036291 -
Amo19g0332 573 Pfam Malic enzyme, N-terminal domain 98 279 IPR012301 GO:0004471
Amo19g0332 573 SMART malic_2 98 279 IPR012301 GO:0004471
Amo19g0332 573 CDD NAD_bind_1_malic_enz 289 567 - -
Amo19g0332 573 ProSitePatterns Malic enzymes signature. 285 301 IPR015884 GO:0004471
Amo19g0332 573 PANTHER MALIC ENZYME-RELATED 6 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0332 Amo-Chr19 4255851 4264143 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0332 K00029 - gmx:100791514 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0332 19 4255851 4264143 Amo19g0332 19 4255851 4264143 ECH
Amo19g0332 19 4255851 4264143 Amo09g0352 09 4016088 4023213 hybridization
Amo19g0332 19 4255851 4264143 Amo19g0332 19 4255851 4264143 PCT
Amo19g0332 19 4255851 4264143 Amo09g0352 09 4016088 4023213 PCT
Amo09g0352 09 4016088 4023213 Amo19g0332 19 4255851 4264143 PCT