Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0352 ATGGAAAGTTTCGCCGGTGGCGGTGTTAAGGACGTGTACGGCGAGGATAGAGCCACAGAGGATCAGTTTGTGACACCATGGAGTGTTTCTGTTGCTAGTGGGTATACATTGTTGCGAGATCCTCACTTCAATAAAGGATTGGCATTCACTGAACAAGAAAGGGATGCACATTACTTGCGTGGTCTTCTTCCTCCATCAGTTATTTCTCAAGAAACTCAGGTGAAGAGACTCATTCAACTAATACGGCAGTATCAAGTACCATTGCTGAAGTATGTGGCAATGATGGATCTTCAGGAGAGCAATGAAAGGTTGTTTTATAGGCTTCTTATTGATCATGTTGAGGAGTTACTTCCTGTTGTCTACACTCCAACAGTTGGTGAAGCTTGCCAGAAATATGGCAGCATCTTCTCAAATCCTCAAGGTCTTTTTATAAGCTTGAAAGAGAAAGGGAGGATTCTTGAAGTTCTAAGGAATTGGCCTGAGATGAACATTCAAGTCATAGTTGTAACTGATGGAGAAAGGATCCTAGGTCTAGGGGACCTTGGCTGTCAGGGAATGGGAATACCAGTTGGGAAACTTTCTTTATATACAGCACTTGGAGGAGTTCGTCCTTCTGCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGTTGAATGATGAATTATACATTGGTCTAAGGCATAAAAGAGCAACTGGCAAGGAATATGATGAACTTCTGCATGAATTCATGACTGCAGTAAAACAAAATTATGGAGAAAAAATCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAGATATAGGTCAACACATCTTGTTTTCAATGATGATATTCAGGGAACAGCGTCGGTGGTCCTCGCCGGACTTGTCGCGGCCCTGAAATTGGTCGGAGGAAACTTAGCTGATCACAAGTTCCTCTTCCTTGGGGCTGGAGAGGCTGGCACCGGAATAGCAGAACTCATAGCCCTTGAAATATCAAAACGGACAAATATTGAAGTGGAAAAAGCTCGCAAGAACATTTGGTTGGTGGATTCAAAGGGATTGATTGTTAGTTCCAGAAAGGAATCACTTCAACATTTCAAGAAGCCTTGGGCTCATGAACATGAACCTATATCAGATCTGGTCAAAGCAGTTAATCAAATTAAGCCAACAGTATTGATTGGAACATCAGGACAAGGCCAAACTTTTACTCAAGCAGTGGTTGAGGCTATGGCCTCCAATAATGAGAAACCTATTATCCTAGCTCTTTCCAACCCAACATCACAATCAGAATGTACCGCTGAACAAGCTTATAATTGGACTAAGGGACGTGTAATTTTTGCTAGTGGAAGCCCATTTGACCCGGTTGAAATTGATGGAAAGAAACATGCCAATAATGCATACATTTTTCCTGGATTCGGTCTTGGTTTGATAATGTCTGGAACAATCCGAGTTCATGATGACATGCTTCTAGCAGCTTCTGAGGCATTGGCTTCACAGGTGAGCAAAGAGGACTATGAAAAGGGGCTTATATATCCTCCCTTCACTAACATTAGAAAGATTTCAGCAAATATAGCTGCAAATGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTCGACTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAGCTGCATGTATACTCCAACCTATAGAAGCTACAGATGA 1710 0.4216 MESFAGGGVKDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFTEQERDAHYLRGLLPPSVISQETQVKRLIQLIRQYQVPLLKYVAMMDLQESNERLFYRLLIDHVEELLPVVYTPTVGEACQKYGSIFSNPQGLFISLKEKGRILEVLRNWPEMNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLRHKRATGKEYDELLHEFMTAVKQNYGEKILVQFEDFANHNAFDLLERYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHKFLFLGAGEAGTGIAELIALEISKRTNIEVEKARKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPISDLVKAVNQIKPTVLIGTSGQGQTFTQAVVEAMASNNEKPIILALSNPTSQSECTAEQAYNWTKGRVIFASGSPFDPVEIDGKKHANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALASQVSKEDYEKGLIYPPFTNIRKISANIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPTYRSYR* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0352 569 CDD NAD_bind_1_malic_enz 289 563 - -
Amo09g0352 569 Pfam Malic enzyme, NAD binding domain 289 537 IPR012302 GO:0051287
Amo09g0352 569 SMART Malic_M_2 289 538 IPR012302 GO:0051287
Amo09g0352 569 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 13 288 IPR046346 -
Amo09g0352 569 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 289 568 IPR036291 -
Amo09g0352 569 PIRSF ME 10 569 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PRINTS Malic enzyme signature 104 128 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PRINTS Malic enzyme signature 419 435 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PRINTS Malic enzyme signature 260 278 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PRINTS Malic enzyme signature 316 332 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PRINTS Malic enzyme signature 164 193 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PRINTS Malic enzyme signature 200 222 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PRINTS Malic enzyme signature 285 301 IPR001891 GO:0004470|GO:0004471
Amo09g0352 569 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 6 569 - -
Amo09g0352 569 SMART malic_2 98 279 IPR012301 GO:0004471
Amo09g0352 569 ProSitePatterns Malic enzymes signature. 285 301 IPR015884 GO:0004471
Amo09g0352 569 Gene3D - 287 569 - -
Amo09g0352 569 PANTHER MALIC ENZYME-RELATED 6 569 - -
Amo09g0352 569 Gene3D - 32 286 IPR037062 GO:0004471
Amo09g0352 569 Pfam Malic enzyme, N-terminal domain 98 279 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0352 Amo-Chr9 4016088 4023213 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0352 K00029 - gmx:100791514 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0332 19 4255851 4264143 Amo09g0352 09 4016088 4023213 hybridization
Amo19g0332 19 4255851 4264143 Amo09g0352 09 4016088 4023213 PCT
Amo09g0352 09 4016088 4023213 Amo19g0332 19 4255851 4264143 PCT
Amo09g0352 09 4016088 4023213 Amo09g0352 09 4016088 4023213 PCT