Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0331 ATGGATTCAAATTTAAGCAGAAGCATAAGCAGGAGCTTAAGCAGATCAAGTTGGAAAATGGAAGAGGTATTTGCAAGTGGGAGATATTCAAGGAGAACCTCACATGTTGATGAAGATGAAGAGGCTCTGAAATGGGCTGCAATTGAGAAGCTTCCAACCTATGATAGGTTGAGAACAAGTATCATTCAGAATTTTGGTGAAGGTGATCATCATCATCATCATGATGCCAAGGCTCAGCATAGAGAAGTTGATGTTAGGAAGCTTGATATGAATGAGAGGCAACAAATCATTGATCAAATCTTCAAGGTTGCTGAAGAGGATAATGAGAAGTTCTTGACCAAGTTCAGAAACAGAATTGATAAGGTTGGAATCAAACTTCCAACAGTTGAAGTAAGGTTTCAGAATTTGACAGTTGAGGCTAATTCCTATGTTGGAAGCAGAGCTTTGCCAACACTTCCAAACACTGCATTGAACATTCTAGAATCAGCACTTGGCATGTGTGGGATTAGTACTACTAAAAGAACAAAGCTCACAATTCTTAAGAATGCCTCCGGAATTGTTAAACCCTCGAGGATGGCCCTTTTACTTGGCCCACCTTCTTCAGGAAAAACAACTCTTTTGTTGGCATTGGCTGGAAAATTGGACTCTGAATTGAAGGTTACCGGAGAAATTAGTTATAATGGACATAAGCCTAATGAATTTGTGCCAAGAAAGACTTCAGCATACATTAGCCAAAATGATGTTCATGTTGGAGAAATGACAGTTAAGGAGACACTTGATTTCTCAGCTAGGTGCCAAGGAGTTGGAACTAGATATGATCTATTAGCCGAGGTTGCTAGAAGAGAAAAGGAAGCTGGCATATTTCCAGAGGCAGAACTTGACCTTTTCATGAAGGCAACTGCAATGGAAGGAACAGAAAGCAGTCTCATCACTGATTATACTCTTAAAATTTTAGGTCTTGATATTTGCAAGGATACTATTGTTGGAGATGAAATGCATAGAGGTGTGTCTGGTGGCCAAAAGAAGCGTGTCACAACTGGTGAGATGATTGTTGGGCCCACAAAAACACTGTTTATGGATGAGATATCCACTGGTCTTGATAGCTCCACAACATATCAAATAGTGAAATGCTTGCAACAAATTGTGCACCTCACTGAAGGAACAATCCTAATGTCCCTTCTCCAACCAGCTCCTGAGACATTCAATCTCTTTGATGACATCATTCTCATTTCTGAGGGCCAAATTGTCTACCAGGGTCCACGTGAGCACATTGTTGAGTTCTTTGAATCATGTGGATTCAAATGCCCTGAGAGAAAGGGCATTGCTGACTTTTTACAAGAGGTTACCTCAAGAAAGGATCAAGAACAATATTGGGCAGACAGAAACATACCATACCGTTATGTAACTGTAACAGAATTCACAAACAAGTTCAAAAGATTCCATGTTGGAATGCAACTGGAAAATGAGCTAAGAGTGCCATTTGACAGATCAAGAGCACACAAAGCAGCACTTGTATACAACAAATGGTCAGTTCCCAAAATGGACCTTCTAAGAGCATGTTGGGACAAAGAGTGGCTCCTCATCAAGAGGAACTCATTTGTCTACATCTTCAAGACTGTCCAGATCATCATTATTGCCTTCATCGCCGCCACTGTGTTTATAAGGACGAAAATGCACCGGCGAAATGAGGACGATGCAGCCCTCTACGTCGGCGCAATCTTGTTTAGCATGATCATGAACATGTTCAATGGTTTTGCTGAGCTTGCACTCACCATTCAAAGGCTTCCTGTGTTTTACAAGCAGAGGGATCATCTTTTCCACCCTGCTTGGACTTACACTCTTCCCAATTTCCTCTTGAGGATTCCAATTTCAATATTCGAGTCTCTTGTTTGGGTGCTTGTTACCTACTACACTATAGGATTTGCACCTGAAGCTGAGAGGTTCTTCAAGCAACTTTTGTTGGTGTTCCTTGTTCAACAAATGGCTGCTGGAATGTTTAGGTTCATTTCTGGAGTCTGCAGAACAATGATCATAGCAAACACTGGTGGTGCACTCATGCTTCTTCTTGTTTTCCTTCTTGGTGGTTTCATCCTTCCGAAACGTGAAATTCCAAATTGGTGGGTGTGGGGATACTGGGTTTCACCACTAACATATGCTTTCAATGCCCTTGCTGTGAATGAATTATATGCACCAAGATGGAGCAAACCATCTCCTACACAGGCAAATTTGACATTAGGTGTGTCTACATTAAGAAACTTTGATGCTTTTGCCAACAAGAACTGGTACTGGATTGGTGTAGGATCACTTTTAGCCTTCACTATTTTGTACAATGTTCTGTTTACTCTTGCACTTATGTACCTAAATCCTCTTGGAAAGAAACAAGCAATTATAACTGAAGAAGATGCGAGCGAAATGGAGGTGGGCGAAGAACCAAGACTAGTTAGGCCACCAGAAACCAATCGAGAATCAATGCTCCGGTCGTTGTCTAAGGCTGATGGAAATAACTCAAGTGAAGTTGCGATGCAGCGAATGAGCAGCCGGTCTAATCCCAATGGAACAAGAAATTCTGATTCGACACTTGATTCGGCCACTGGTGTAGCCCCAAAGAGAGGAATGATTCTACCTTTCCAGCCACTTGCAATGTCCTTTGACAGTGTTAATTACTATGTGGACATGCCTGCAGAAATGAAAGAGCAAGGAGTGGCAGAGGATAGGCTGCAACTTCTGAGGGAAGTAACAAGTGCCTTTAGGCCTGGAGTCTTGACTGCTCTGATGGGAGTCAGTGGAGCTGGGAAGACAACTTTGATGGATGTTTTGGCCGGAAGAAAGACCGGTGGTTACATTGAAGGAGATATTAGAATCTCCGGGTTCCCTAAGAAGCAAGAAACCTTTGCTAGAGTTTCAGGTTACTGCGAACAGACCGATATTCATTCGCCACAAGTTACTATCCGAGAATCTTTGCTTTACTCGGCATTCCTTCGCTTACCTAAAGAAGTTAGCCGCGAAGAAAAGACACAATTTGTGGACCAAGTTATGGACTTGGTAGAGTTGGATAGTCTCAAGGATGCTATAGTTGGGCTTCCAGGAGTTACAGGGCTGTCGACAGAACAGCGAAAGAGGCTGACAATCGCTGTCGAGCTTGTTGCTAATCCTTCAATCATTTTCATGGATGAACCAACCTCAGGTCTTGATGCAAGAGCAGCAGCCATTGTTATGAGAACAGTGAGGAACACTGTGGACACCGGAAGAACAGTTGTCTGCACAATTCACCAGCCTAGCATAGATATCTTTGAAGCTTTTGACGAGCTCTTGCTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCTTTAGGCCGGAATTCGCACAAGATTGTAGAATACTTCGAGGCAATTCCAGGTGTCCCAAAGATCAAGGAAATGTACAACCCTGCAACATGGATGCTTGAAGTAAGTTCCATTGCAGCCGAAGTCCGGCTTGGAATGGACTTTGCTGAATACTACAAGAACTCTGCTTTGTTCCAGCGCAACAAAACTCTTGTGAAGGAGCTAAGCACGCCGCCTCCTGGCGCAAAGGATCTATATTTCCCCACCAAGTACTCTCAAAATGCATGGGGTCAGTTCACATCTTGTTTATGGAAGCAATGGCTGACATATTGGAGAAGTCCAGATTACAATCTTGTTAGATTCTTCTTCACCTTAGCAAGTGCTCTCATGATTGGGACAGTGTTCTGGAGAGTTGGCAAGCACACGTTGACCACATCTAGCTTGACCATGGTTATTGGAGCAATGTATGCTGCAGTTATTTTCGTTGGAATTAACAACTGCCAAACTGTCCAACCGGTAGTAGCCATTGAACGAACTGTATTCTATCGAGAAAGAGCAGCCGGAATGTATGCTCCTATGCCTTATGCTATTGCACAGGTTCTTACTGAGATTCCTTATGTCTTCATCCAATCTGTGTATTACTCACTCATAGTGTATGCAATGGTGTCCTTTGACTGGAAGGTGGAGAAGTTCTTTTGGTTCTTCTTTGTCAGCTTCTTCTCCTTCTTGTACTTCACATACTATGGCATGATGACTGTTTCCATCACACCAAACCATCAAGTTGCATCGATCTTCGCAGCAGCATTCTATGGACTCTTCAATCTCTTCTCTGGTTTCTTTATCCCAAGACCTAAAATTCCTAAATGGTGGGTTTGGTACTACTGGATTTGTCCTGTGGCATGGACAGTGTATGGACTAATCGTTTCGCAGTACAGAGATATCACCACCGAAATGTTTATAGCCAGCGAAAATAGGAACTACACTGTCAAAGATTATATTAACCACCATTATGGTTTCAAATCAGACTTCATGGGACCAGTTGCTGCAGTTTTGGTGCTTTTCGCTGTCTTCTTCGCCTTTGTGTTTGCCGTATGCATCAGGGCACTGAACTTCCAAACAAGATAA 4452 0.4272 MDSNLSRSISRSLSRSSWKMEEVFASGRYSRRTSHVDEDEEALKWAAIEKLPTYDRLRTSIIQNFGEGDHHHHHDAKAQHREVDVRKLDMNERQQIIDQIFKVAEEDNEKFLTKFRNRIDKVGIKLPTVEVRFQNLTVEANSYVGSRALPTLPNTALNILESALGMCGISTTKRTKLTILKNASGIVKPSRMALLLGPPSSGKTTLLLALAGKLDSELKVTGEISYNGHKPNEFVPRKTSAYISQNDVHVGEMTVKETLDFSARCQGVGTRYDLLAEVARREKEAGIFPEAELDLFMKATAMEGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEGTILMSLLQPAPETFNLFDDIILISEGQIVYQGPREHIVEFFESCGFKCPERKGIADFLQEVTSRKDQEQYWADRNIPYRYVTVTEFTNKFKRFHVGMQLENELRVPFDRSRAHKAALVYNKWSVPKMDLLRACWDKEWLLIKRNSFVYIFKTVQIIIIAFIAATVFIRTKMHRRNEDDAALYVGAILFSMIMNMFNGFAELALTIQRLPVFYKQRDHLFHPAWTYTLPNFLLRIPISIFESLVWVLVTYYTIGFAPEAERFFKQLLLVFLVQQMAAGMFRFISGVCRTMIIANTGGALMLLLVFLLGGFILPKREIPNWWVWGYWVSPLTYAFNALAVNELYAPRWSKPSPTQANLTLGVSTLRNFDAFANKNWYWIGVGSLLAFTILYNVLFTLALMYLNPLGKKQAIITEEDASEMEVGEEPRLVRPPETNRESMLRSLSKADGNNSSEVAMQRMSSRSNPNGTRNSDSTLDSATGVAPKRGMILPFQPLAMSFDSVNYYVDMPAEMKEQGVAEDRLQLLREVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARVSGYCEQTDIHSPQVTIRESLLYSAFLRLPKEVSREEKTQFVDQVMDLVELDSLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIVEYFEAIPGVPKIKEMYNPATWMLEVSSIAAEVRLGMDFAEYYKNSALFQRNKTLVKELSTPPPGAKDLYFPTKYSQNAWGQFTSCLWKQWLTYWRSPDYNLVRFFFTLASALMIGTVFWRVGKHTLTTSSLTMVIGAMYAAVIFVGINNCQTVQPVVAIERTVFYRERAAGMYAPMPYAIAQVLTEIPYVFIQSVYYSLIVYAMVSFDWKVEKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYRDITTEMFIASENRNYTVKDYINHHYGFKSDFMGPVAAVLVLFAVFFAFVFAVCIRALNFQTR* 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0331 1483 Gene3D - 895 1129 IPR027417 -
Amo19g0331 1483 Pfam ABC transporter 180 362 IPR003439 GO:0005524
Amo19g0331 1483 Pfam ABC-transporter N-terminal 91 154 IPR029481 -
Amo19g0331 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 164 437 IPR003439 GO:0005524
Amo19g0331 1483 MobiDBLite consensus disorder prediction 802 864 - -
Amo19g0331 1483 Pfam ABC-2 type transporter 517 728 IPR013525 GO:0016020|GO:0140359
Amo19g0331 1483 Pfam ABC-2 type transporter 1207 1420 IPR013525 GO:0016020|GO:0140359
Amo19g0331 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 881 1133 IPR003439 GO:0005524
Amo19g0331 1483 CDD ABCG_PDR_domain1 173 419 IPR034001 -
Amo19g0331 1483 CDD ABCG_PDR_domain2 878 1116 IPR034003 -
Amo19g0331 1483 Pfam Plant PDR ABC transporter associated 733 797 IPR013581 -
Amo19g0331 1483 Pfam ABC-2 type transporter 395 470 IPR043926 GO:0140359
Amo19g0331 1483 Pfam ABC-2 type transporter 1090 1150 IPR043926 GO:0140359
Amo19g0331 1483 Gene3D - 167 473 IPR027417 -
Amo19g0331 1483 SMART AAA_5 189 421 IPR003593 -
Amo19g0331 1483 SMART AAA_5 918 1110 IPR003593 -
Amo19g0331 1483 Pfam ABC transporter 909 1061 IPR003439 GO:0005524
Amo19g0331 1483 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1483 - -
Amo19g0331 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 436 IPR027417 -
Amo19g0331 1483 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 9 1483 - -
Amo19g0331 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 1118 IPR027417 -
Amo19g0331 1483 MobiDBLite consensus disorder prediction 822 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0331 Amo-Chr19 4244729 4254569 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0331 K08711 - gmx:100798588 2527.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0331 19 4244729 4254569 Amo19g0331 19 4244729 4254569 ECH
Amo19g0331 19 4244729 4254569 Amo09g0353 09 4024499 4033688 hybridization
Amo19g0331 19 4244729 4254569 Amo19g0331 19 4244729 4254569 PCT
Amo19g0331 19 4244729 4254569 Amo09g0353 09 4024499 4033688 PCT
Amo09g0353 09 4024499 4033688 Amo19g0331 19 4244729 4254569 PCT