Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0192 ATGGACGTGGGTCAGATGCAGAGACAGTGGCTCGACTACACCAGATCCTTGTTCATCGAGGGTTTCTTGGATAATCAGTTTCTGCAACTTCAGCAGCTCCAAGATGAGAACAACCCTGAATTTGTTGTTGAAGTTGTGTCTCTCTTCTTTGATGATTCTGAGAGGCTTCTCAAAGATCTTAATTTTGCTCTGGATCAGCAAGGTGTTGACTTCAAGAAAGTTGATGCTCATGTTCATCAGTTGAAGGGTAGCAGCTCAAGCATAGGAGCACAAAGGGTGAAAAATGCATGCATTGCTTTCCGCAACTTCTGTGAGGATCAGAATGTAGAAGCGTGCCTTAGATGTCTACAACAAGTGAAGCAAGAGTATTGCCTTGTCAAGAATAAGCTTGAAACACTTTTTAGGCTTGAGCAACAAATTGTTGCAGCTGGCGGATCAATCCCTATGATGGAACTGGGTTTCTAA 465 0.4323 MDVGQMQRQWLDYTRSLFIEGFLDNQFLQLQQLQDENNPEFVVEVVSLFFDDSERLLKDLNFALDQQGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEDQNVEACLRCLQQVKQEYCLVKNKLETLFRLEQQIVAAGGSIPMMELGF* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0192 154 CDD HPT 44 123 IPR008207 GO:0000160
Amo19g0192 154 Gene3D HPT domain 1 154 IPR036641 GO:0000160
Amo19g0192 154 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 1 1 149 - -
Amo19g0192 154 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 143 IPR008207 GO:0000160
Amo19g0192 154 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 4 140 IPR036641 GO:0000160
Amo19g0192 154 Pfam Hpt domain 44 122 IPR008207 GO:0000160
Amo19g0192 154 PANTHER - 1 149 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0192 Amo-Chr19 2197144 2199630 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0192 K14490 - gmx:100306589 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0192 19 2197144 2199630 Amo09g0027 09 328498 329740 hybridization
Amo19g0192 19 2197144 2199630 Amo09g0027 09 328498 329740 PCT
Amo09g0027 09 328498 329740 Amo19g0192 19 2197144 2199630 PCT