Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2138 ATGGGATTCTTCGGCGGGATGTTCATCGGCATCGCCTTCGGCGTTGGATTGATCGTTGCTTTTGCTCGCTACGAAAGCATTCGATCCAAGCGTCGTTCTGATTTGGCGAAGACGGTGGCGATGTTCGCGAGGATGACGGTGGAAGATTCTAGAGTACTTCTGCCTGGAAAGTTCTACCCTTCATGGGTTTTAAAATGGCTCAACACGCAACTCGACAAGATGTGGCCATTCATCAATGATGCAGCTTCGGAGTTGATAAAGAGTAGTGTGGAGCCAATTCTAGAGCAATATAAGCCAGTTATTTTGGCTTCTCTTACCTTCTCCAAGTTGACCCTTGGCACAGTGGCTCCACAATTTACCGGAATTGCCATACTTGAAGAGGAAAGTGGGCCTAATGAATTTACCATAGAGTTAGAGATGCAGTGGGATGGTGACCCCAACATTGTTCTTGATATCAAAACCAAAGTTGGCGTTGTACTTCCCATCCAGGTAAAAAATATTGGATTCACTGGGGTTTTTTGGTTGATATTCAAACCACTAGTGGATGAGTTCCCTACTTTTTCAGCTGTTTCTGTTTCATTGAGAGAAAAGAAAGATCTGGATTTTACTCTAAAAGTAGTCGGCGGTGATATATCAGCTTTACCGGGGGTATCTGATGCTATAGAGGAAACAATTCGTGATGCTATTGAAGACTCTATAACTTGGCCAATGCGGAAAGTCATACCAATTTTACCTGGGGATTACAGTAATCTGGAGTTGAAACCGGTTGGAATATTAGATGTGAAACTGGTGCAAGCAAAGGACTTAACAAATAAGGATATCATTGGTAAATCCGACCCTTTTGCTGTCCTGTTTGTAAGGCCACTTCGTGATAGAACCAAAACAAGCAAAGTAATCAGGATTAGTAATCCAACTGTTTGGCACATTCAGAACAATGACTTGAATCCAATATGGAATGAGCACTTTGAGTTCATTGTTGAAGATGCGGATACACAGCACTTGACTGTAAGAGTTTTCGATGATGAAGGCATTTCTGCTGCCGAGCTTATTGGTTGTGCCCAAATGCCTCTAAAGGAACTAGAACCTGGTAAAGTCAAGATTGTGTGGTTGAAACTGGTCAAGGATTTGGAGGTCCATAGGGATAACAAATACAGGGGTGAGGTGCACTTGGAGCTGTTGTATATTCCACATGGAACAGATGACAGCTTTAGGAACCCCTTCGACCCTGATTTCGCATTGACCATATTCGAGAAGACCCTCAAGAGTGGAACTGAACCAGAGGCTGAGGATATTACAGCACGAAAGAAGAACGTCATTGTAAGAGGTGTTCTCTCTGTGACGGTTATTTCAGCTGAAGACTTGCCAGTTGTGGACTTAATGGGCAAGGCTGATCCATTTGTTGTCCTGACGTTGAAGAAATCAGAGAAAAAACTCAAGACTAGGGTCGTAAACGAATCCTTAAATCCAGTCTGGAATCAAACATTTGACTTTGTTGTAGAGGACGGCTTACATGAAATGTTAATTGTTGAAGTCTGGGATCACGATACTTTTGGGAAGGACAAAATGGGAAAAGTGATAATGACTCTAACAAAGGTGATCTTAGAAGGGGAATATCAGGAAACGTATACACTAGAGGGAGCTAAATCTGGAAGGCTTACTTTGCATCTGAGATGGACTCCACAGCACAAGTACCGGGATCCTTAG 1704 0.4296 MGFFGGMFIGIAFGVGLIVAFARYESIRSKRRSDLAKTVAMFARMTVEDSRVLLPGKFYPSWVLKWLNTQLDKMWPFINDAASELIKSSVEPILEQYKPVILASLTFSKLTLGTVAPQFTGIAILEEESGPNEFTIELEMQWDGDPNIVLDIKTKVGVVLPIQVKNIGFTGVFWLIFKPLVDEFPTFSAVSVSLREKKDLDFTLKVVGGDISALPGVSDAIEETIRDAIEDSITWPMRKVIPILPGDYSNLELKPVGILDVKLVQAKDLTNKDIIGKSDPFAVLFVRPLRDRTKTSKVIRISNPTVWHIQNNDLNPIWNEHFEFIVEDADTQHLTVRVFDDEGISAAELIGCAQMPLKELEPGKVKIVWLKLVKDLEVHRDNKYRGEVHLELLYIPHGTDDSFRNPFDPDFALTIFEKTLKSGTEPEAEDITARKKNVIVRGVLSVTVISAEDLPVVDLMGKADPFVVLTLKKSEKKLKTRVVNESLNPVWNQTFDFVVEDGLHEMLIVEVWDHDTFGKDKMGKVIMTLTKVILEGEYQETYTLEGAKSGRLTLHLRWTPQHKYRDP* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2138 567 CDD C2 444 544 - -
Amo08g2138 567 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 566 IPR045050 GO:0008289
Amo08g2138 567 PRINTS C2 domain signature 459 471 IPR000008 -
Amo08g2138 567 PRINTS C2 domain signature 507 515 IPR000008 -
Amo08g2138 567 PRINTS C2 domain signature 485 498 IPR000008 -
Amo08g2138 567 Gene3D C2 domain 439 565 IPR035892 -
Amo08g2138 567 Pfam C2 domain 442 543 IPR000008 -
Amo08g2138 567 Pfam C2 domain 257 372 IPR000008 -
Amo08g2138 567 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 60 244 IPR031468 GO:0008289
Amo08g2138 567 ProSiteProfiles C2 domain profile. 425 542 IPR000008 -
Amo08g2138 567 SMART C2_3c 258 369 IPR000008 -
Amo08g2138 567 SMART C2_3c 443 541 IPR000008 -
Amo08g2138 567 CDD C2 259 372 - -
Amo08g2138 567 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 397 IPR035892 -
Amo08g2138 567 ProSiteProfiles C2 domain profile. 236 370 IPR000008 -
Amo08g2138 567 Gene3D C2 domain 255 397 IPR035892 -
Amo08g2138 567 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 65 243 IPR039010 -
Amo08g2138 567 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 438 561 IPR035892 -
Amo08g2138 567 PANTHER SYNAPTOTAGMIN-4 1 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2138 Amo-Chr8 34251898 34259042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2138 259 559 Lipid Metabolism Gene Families AT1G51570 21.884 3.73e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2138 - - gmx:100787972 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2138 08 34251898 34259042 Amo18g3460 18 137706922 137713952 hybridization