Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3230 ATGGAGGAAGAGAAGAAGAGGAACGGGATAGTTTCGGTTGAACCAAAACCGAGCAATAGTTTCACGTCAAAAGTGATAGACTTGTTGGAGAAGCTTCTAGTGAAGTTGATGTATGACACTTCACTCCCACATCACTACCTCACTGGTAATTTCGCACCTCTTCCCGATGAAACCCCTCCGACTAAGGATCTTCCACTCACCGGCCACCTCCCGGATTGCTTGAATGGTGAGTTTGTCAGGGTTGGACCTAATCCGAAGTTTTCTCCTGTGGCCGGATATCACTGGTTTGATGGAGATGGAATGATTCATGGTTTGCGTATCAAAGATGGAAAAGCAACATATGTTTCTCGTTTTGTGAAAACTTCTCGTCTTAAACAGGAAGAGTACTTTGGAGGCGCCAAATTTATGAAGATTGGAGATCTCAAGGGTCTGTTTGGACTGTTGATGGTTAACATGCAAATGTTGAGAGCTAAATTGAAAGTACTTGATTTGTCTTTTGGGAATGGAACAGCCAATACAGCTCTTATATATCATCACGGAAAGCTTCTAGCACTCTCAGAAGCTGATAAACCCTATGCTATTAAAGTTTTTGAAGATGGTGATTTGCAGACACTTGGTTTGTTAGATTATGACAAGAGATTGGGCCATTCTTTCACAGCTCATCCAAAAGTTGACCCATTTACTGGCGAGATGTTCACATTTGGCTATTCACATACACCACCATATATTACGTACAGAGTTATTTCAAAGGATGGTTTTATGCATGATCCTGTACCCATAACAATAGCAGAGCCTATCATGATGCATGACTTTGCCATCACAGAAAATTATGRAATATTTATGGATCTTCCTCTGTATTTTAGGCCAAAGGAAATGGTAAAGAATAAGACATTGATATTCACATTTGATTCGACCAAGAAAGCTCGATTTGGGGTCCTACCTCGGTATGCTAAGGATGAGAAGCATATTAGGTGGTTCGAGCTTCCAAACTGCTTCATATTCCACAATGCTAATGCATGGGAGGAGGAGGATGAGGTTGTTTTGATCACATGCCGCCTTAAGAATCCAGATCTGGACATGGTCAGCGGAACTGTCAAGGAAAAGCTTGAAAATTTCTCAAATGAACTGTATGAAATGCGATTTAACATGAAATCTGGCGAAGCTTCTCAAAAGAAACTATCTGCATCTGCTGTTGATTTTCCCAGGGTGAATGAAAGCTACACTGGCAGGAAGCAACGATATGTATATGGAACCACATTAGACAGCATTGCAAAAGTTACTGGAATTATTAAATTTGATTTGCATGCCGAACCGGACTCTGGGAAAACAAAGCTTGAAGTCGGAGGAAATGTTCAGGGTCTCTACGACTTGGGACCCGGGAGGTTTGGTTCCGAGGCTGTTTTTGTCCCACGTATCCCTGGGACAACTTCTGAAGAAGACGATGGATACTTGATCTGTTTTGTACATGATGAGAATACTGGAAAATCGTTCGTGCATGTCATCGATGCTAAAACAATGTCAGCAGATCCTGTTGCTGTTGTTGAGCTGCCGCATAGAGTTCCTTATGGTTTCCACGCCTTCTTTGTGACAGAGGACCAACTGCAAGAACAGGCGTAA 1617 0.4212 MEEEKKRNGIVSVEPKPSNSFTSKVIDLLEKLLVKLMYDTSLPHHYLTGNFAPLPDETPPTKDLPLTGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVKTSRLKQEEYFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDLSFGNGTANTALIYHHGKLLALSEADKPYAIKVFEDGDLQTLGLLDYDKRLGHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGFMHDPVPITIAEPIMMHDFAITENYXIFMDLPLYFRPKEMVKNKTLIFTFDSTKKARFGVLPRYAKDEKHIRWFELPNCFIFHNANAWEEEDEVVLITCRLKNPDLDMVSGTVKEKLENFSNELYEMRFNMKSGEASQKKLSASAVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVFVPRIPGTTSEEDDGYLICFVHDENTGKSFVHVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEDQLQEQA* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3230 538 PANTHER BETA-CAROTENE DIOXYGENASE 5 535 IPR004294 GO:0016702
Amo18g3230 538 Pfam Retinal pigment epithelial membrane protein 51 529 IPR004294 GO:0016702
Amo18g3230 538 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 5 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3230 Amo-Chr18 133072929 133081546 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3230 K00465 - gmx:100789210 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3230 18 133072929 133081546 Amo18g3230 18 133072929 133081546 ECH
Amo10g2404 10 83896036 83902236 Amo18g3230 18 133072929 133081546 hybridization