Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2404 ATGYCGATGATTGGTTTGCCMGAATTCCCYAAAATTGTGGCAACTTCTGCTGTTAGATTGGTTGATGCTTTTGTGGATTCATTCTTTGAATTCATTGATCAGCCATTGCTTCCATCTCAGAATAACTTTGCTCCWGTGGAGGAGTTGGGAGAAACAATGGTTGTGACTAACAACATCGATGGCCATATTCCGAATGGTTTTCCTGAGGGTGTCTACATCAGAAATGGACCAAATCCACTATTTGGAGGACTGAAATCAACAAATTCAATATTTGGGAAGACAAGTCACGTATGGGTGGAAGGAGAGGGAATGCTTCATGCATTGTATTTCAATTATAATAATAATAATAATAATTGGACGGTTCTATACAACAACAGGCACGTTGAAACTGAGACCTACAAGCTTGAAAAACAAAGGAACAAACCATCATTTTTGCCGGCCATTCAAGGCGATTCACTTGCCATTTTGTTTGCATACCTCTTAAATTTGTTGAGATTTGGCAAAGTAAACAAATACATTAGCAACACCAATGTGTTTGAGCATTCAGGCAAGTTTTATTCCGTGGCTGAAAGTCACATCCCACAAGAGATTGACATCTTTACCCTCAAAACCTTAAGGAATTGGGATGTCAATGGAGCCTGGAATAGACCCTTTTGCAGCCACCCAAAGAAAGCCCCAGGTACAGGGGAGCTTGTKACATTAGGAATATCTCCAATTTTACCTTTTTGTGAACTTGGAATAATTTCTGCTGATGGGAAAAAATTGGATCACAAAGTTGATCTCAAACTGAACAGGTGCACCCTTTGCCATGAACTAGGTGTTACACAGAGACTAATAAGGTATGATAAAGATGAATATGCAAGAATTGGTGTTATGCCACGCTATGGCGATGCAAGCTCAATCAAGTGGTTTGAAGTGGAGCCTAATTGCACCTTCCATATCATCAATTCTTTTGAGGAGGGTCATGAGGTTGTAGTAAGAGGCTGCAGATCTCTTGATTCATTGATTCCTGGACCTCATCCGAGTTCGAATGAATTCGATTGTCTGTCTCGTTGTTACGAATGGCGATTGAACATGGAAACAGGGGAAGTTAAGGAGAGAAGTCTGATCGGACCCAAAGTAGTGTATATGGATTTTCCTATGGTCAATGAAAACTTCATGGGTATCAAGAATAGATATGCATACACACAAGTAGTTGATCCACCTGCAAGCTCTACTCAAGATGTGCCAAAATATGGAGGTCTAGCAAAGCTCTACTTCGAAGAATCATCGAGTGAAAAWTTATTTATGGGAGACAAACAACATGATGAAGATCCAATAAGGGTTGAATACCATATGTTTGAGAAGAACACATTTTGCAGTGGAGCTGCTTTTGTACCGAAAGATGGTGGTGTAGAAGAAGATGATGGTTGGATTATCAGTTTTGTTCATAACGAAGATAATGCCATATCTCAAGTTCATATAATTGATGGAAAGAAGTTAAGTGGTGAGGCAGTTGCCAAGATTACATTGCCATGCAGAYTTCCTTACGGTTTCCATGGAGCTTTCATGCCAATCTCTTTTCAGGCGTCTCACTAG 1578 0.3992 MXMIGLPEFPKIVATSAVRLVDAFVDSFFEFIDQPLLPSQNNFAPVEELGETMVVTNNIDGHIPNGFPEGVYIRNGPNPLFGGLKSTNSIFGKTSHVWVEGEGMLHALYFNYNNNNNNWTVLYNNRHVETETYKLEKQRNKPSFLPAIQGDSLAILFAYLLNLLRFGKVNKYISNTNVFEHSGKFYSVAESHIPQEIDIFTLKTLRNWDVNGAWNRPFCSHPKKAPGTGELVTLGISPILPFCELGIISADGKKLDHKVDLKLNRCTLCHELGVTQRLIRYDKDEYARIGVMPRYGDASSIKWFEVEPNCTFHIINSFEEGHEVVVRGCRSLDSLIPGPHPSSNEFDCLSRCYEWRLNMETGEVKERSLIGPKVVYMDFPMVNENFMGIKNRYAYTQVVDPPASSTQDVPKYGGLAKLYFEESSSEXLFMGDKQHDEDPIRVEYHMFEKNTFCSGAAFVPKDGGVEEDDGWIISFVHNEDNAISQVHIIDGKKLSGEAVAKITLPCRXPYGFHGAFMPISFQASH* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2404 525 PANTHER BETA-CAROTENE DIOXYGENASE 8 519 IPR004294 GO:0016702
Amo10g2404 525 Pfam Retinal pigment epithelial membrane protein 44 277 IPR004294 GO:0016702
Amo10g2404 525 Pfam Retinal pigment epithelial membrane protein 279 518 IPR004294 GO:0016702
Amo10g2404 525 PANTHER OS06G0162550 PROTEIN 8 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2404 Amo-Chr10 83896036 83902236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2404 - - ahf:112717820 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2404 10 83896036 83902236 Amo18g3230 18 133072929 133081546 hybridization