Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2901 ATGTCTTCACAAAGTGTAGTTCTTTCATCACTTTTGCTCATGTCATTGGTTTCTTCTTCTGGCTTGTGTTTTGGCTCTTACATTGGCCCTAGGAGGTTGATGCAGACAAAACATGATGAAAATATGGATATCATGTTAAGGGTTCATCATCAATCAACACCATCTTCAATAATGTCTCAAAAAACGTTTAGTGTTTCACATTATGGAGCAAAATCTGGTGATGGAAGAGTTGATAATGAGGCATTTGAGAAGGCATGGAATTTAGCATGTTCAGAAGGGGGTGCTCTTGTGGTCCCTAAAGAGAAGGTTTATCACCTTAAGCCAATAAAATTTTCAGGCCCATGCCAAGCCAGTACCACTTTTATGTTATATGGAACAATCAAAGCATGGCCTAAAATTTCAGCCTATGAAGAAGATAGACAGCACTGGATTATGTTTGATAATGTAACGAATTTTGGTGTTGATGGTGGCGGCACTTTCAACGGCAATGGAAAAATATGGTGGGAAAACTCTTGCAAAACTAACGAAAGCCTTCCATGTAAGGATGCACCAACTGCTGTGACTTTCAATGAATGCAACAATTTGAGAGTGGAAAACGTTGGATTCCGAAATGCACAACAAATGCATGTTAGATTTCAGAAATGCAACAACGTTACAGCTTCAAATCTGGTGGTTCAAGCTCCTGGGGATAGCCCTAACACTGATGGACTTCACGTCACTCAAACCAAAAATATTTTCATAAGAAACTCTGTCATTCGTACAGGTGATGACTGCATTTCAATAGTGAGTGGTTCCCAAAATGTTCGTGCTACGGATATAGTTTGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAATTCAGAAGCACAAGTCTCCAATGTGGTAATCGACGGAGCCATTTTCACAGGAACCTCTAATGGTGTTAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGCAAAAGACATCAAATTTGTTAATATAGAAATGCGAAACGTGACCAATCCCATAATCATAGATCAAAACTACTGCGATCAGAAAGAACCATGCCAAGAGCAGGAATCAGCAGTGAAATTGAGCAATGTGGTGTACCAGAACATCATAGGAACAAGTGCAACACAAGTTGCAATCAAATTCAACTGCAGCAAAACCGTCCCCTGCAGATCAATCTATTTGCAAGACGTAATTCTAAAGCCGGAACGCCATGGCAGCGACACGGTTGCGACATGTGAGAACGTTAGATATGCCAACAGAGGACAGCTTTTTCCTCAGTGCTCTACTGCTTGA 1299 0.4103 MSSQSVVLSSLLLMSLVSSSGLCFGSYIGPRRLMQTKHDENMDIMLRVHHQSTPSSIMSQKTFSVSHYGAKSGDGRVDNEAFEKAWNLACSEGGALVVPKEKVYHLKPIKFSGPCQASTTFMLYGTIKAWPKISAYEEDRQHWIMFDNVTNFGVDGGGTFNGNGKIWWENSCKTNESLPCKDAPTAVTFNECNNLRVENVGFRNAQQMHVRFQKCNNVTASNLVVQAPGDSPNTDGLHVTQTKNIFIRNSVIRTGDDCISIVSGSQNVRATDIVCGPGHGISIGSLGAGNSEAQVSNVVIDGAIFTGTSNGVRIKTWQGGSGYAKDIKFVNIEMRNVTNPIIIDQNYCDQKEPCQEQESAVKLSNVVYQNIIGTSATQVAIKFNCSKTVPCRSIYLQDVILKPERHGSDTVATCENVRYANRGQLFPQCSTA* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2901 432 Gene3D - 47 429 IPR012334 -
Amo18g2901 432 Pfam Glycosyl hydrolases family 28 95 418 IPR000743 GO:0004650|GO:0005975
Amo18g2901 432 PANTHER - 5 430 - -
Amo18g2901 432 PANTHER POLYGALACTURONASE 5 430 - -
Amo18g2901 432 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
Amo18g2901 432 SUPERFAMILY Pectin lyase-like 49 430 IPR011050 -
Amo18g2901 432 SMART pbh1 295 316 IPR006626 -
Amo18g2901 432 SMART pbh1 265 285 IPR006626 -
Amo18g2901 432 SMART pbh1 215 241 IPR006626 -
Amo18g2901 432 SMART pbh1 324 345 IPR006626 -
Amo18g2901 432 SMART pbh1 242 263 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2901 Amo-Chr18 123890679 123896284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2901 1 430 Glycoside Hydrolase AT3G07970 53.468 1.22e-158 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2901 K01184 - gmx:100796446 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2901 18 123890679 123896284 Amo08g1671 08 27732708 27738046 hybridization
Amo13g1451 13 19432971 19436380 Amo18g2901 18 123890679 123896284 PCT