Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1451 ATGTCTTTATTACTAAGGCTATTTATCTCACTTTACATTACCCTTGCTTCATTAGGCTTATGTTTTAGCTATTATATAGAGGAACCATTTCATCACACAAATGTTGAACCATACATTGTTCATCATGATGGGAGATTTATCAAGAGAAAACATGAACACTTTGGCCTAATGATGAGAGCTAATAGAGCTAAAAGCCCTCATTTTTCAAGGTCAAGTGGAACAATTAGTGTTAATGACTTCGGAGCCAGAGCTGATGGAAGCGACGACAGTCGAGCATTTGAAAAGGCTTGGAATGAAGCATGTTCTAGTGGGGTCACCCTTGTGGTGCCTGAAAGAAGGACCTACACTCTTAAGCCAATAAGATTTTCAGGTCCATGCAGACCCAACACTGCATTCATGATATATGGAACAATTAAGGCATGGCCAGAGATGTCAGCATATGAAGATGATAGAAAACATTGGATTGTGTTTGATAGTGTCAACAACTTCAGAGTTGATGGTGGTGGCACTTTCAATGGCAATGGCAAAAAATGGTGGCAGAATTCATGCAAAACTAATGATAACCTTCCATGCAAAGATGCACCAACTGCTGTGACATTTTACCAATGCAAGAATTTGAGAGTGGCAAATGTGAGATTGAAAGATGCACAACAAATGCATGTGGCATTTGAGAGTTGCTTCAATGTTATAGTTTCCAATGTTCTTGTTAGAGCACCAGGATACAGTCCCAACACTGATGGAATTCATGTTGCTGAAACACAAAACATTGTTATAAGCGACAGTGACATTGGAACAGGTGATGATTGTATTTCAATAGTAAGTGGATCTCAAAATGTTAGAGCTACAGATATCACATGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGATAACTCTGAAGCTGTAGTGTCCAATGTGGTTGTGAACAGAGCCACCTTAACAGGAACAAGTAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCTGGTTATGCAAGGAACATAAAGTTTTTGAACATAGTGATGCAAAATGTGACAAATCCCATAATCATAGATCAAAACTACTGTGATCAAGAAAAGCCATGCCATCAGCAGAACTCAGGAGTTCAACTAAGCAATGTGCTTTACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCTATAAAATTTGATTGTAGCAGAACAGTGCCATGCAGAGAAATCTACCTTGAGGATGTGATATTAGAAGCAGAAGATGGTGGCAATGGCGACACGGTTGCCACGTGTCAGAATGTAAGATATGTGAACCGAGGAAAGTTTTTCCCTCAATGCACTCCAATGAGAAATCAAAGGGGAGGAAGATTTTAA 1359 0.3988 MSLLLRLFISLYITLASLGLCFSYYIEEPFHHTNVEPYIVHHDGRFIKRKHEHFGLMMRANRAKSPHFSRSSGTISVNDFGARADGSDDSRAFEKAWNEACSSGVTLVVPERRTYTLKPIRFSGPCRPNTAFMIYGTIKAWPEMSAYEDDRKHWIVFDSVNNFRVDGGGTFNGNGKKWWQNSCKTNDNLPCKDAPTAVTFYQCKNLRVANVRLKDAQQMHVAFESCFNVIVSNVLVRAPGYSPNTDGIHVAETQNIVISDSDIGTGDDCISIVSGSQNVRATDITCGPGHGISIGSLGADNSEAVVSNVVVNRATLTGTSNGVRIKTWQGGSGYARNIKFLNIVMQNVTNPIIIDQNYCDQEKPCHQQNSGVQLSNVLYQNIRGTSASEVAIKFDCSRTVPCREIYLEDVILEAEDGGNGDTVATCQNVRYVNRGKFFPQCTPMRNQRGGRF* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1451 452 Gene3D - 60 446 IPR012334 -
Amo13g1451 452 PANTHER - 7 442 - -
Amo13g1451 452 PANTHER POLYGALACTURONASE 7 442 - -
Amo13g1451 452 SMART pbh1 335 356 IPR006626 -
Amo13g1451 452 SMART pbh1 253 274 IPR006626 -
Amo13g1451 452 SMART pbh1 306 327 IPR006626 -
Amo13g1451 452 SMART pbh1 226 252 IPR006626 -
Amo13g1451 452 Pfam Glycosyl hydrolases family 28 105 430 IPR000743 GO:0004650|GO:0005975
Amo13g1451 452 SUPERFAMILY Pectin lyase-like 71 443 IPR011050 -
Amo13g1451 452 ProSitePatterns Polygalacturonase active site. 283 296 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1451 Amo-Chr13 19432971 19436380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1451 7 442 Glycoside Hydrolase AT3G07970 54.977 9.15e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1451 K01184 - gmx:732596 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1451 13 19432971 19436380 Amo18g2901 18 123890679 123896284 PCT
Amo13g1451 13 19432971 19436380 Amo08g1671 08 27732708 27738046 PCT