Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1944 ATGCAAGCATCACTTGCATGCTATTCACGTCCACATGGAAACCCACTTGTCAAACTCAATCTCCAAACATCATCACACACCACCACCAACAGCTATAACCTCCTACCATCAATCACTTCACACACACCAATCTCTCTTCCCCTGAAACTCCAACCTCAGATTCTTTTGAGCCCTTCCCCTTTACTTCCCAAACCAAAATCAAACAGAACTTTGAGCTCCAAAGTTGGTCCACTTGGTTGCGGCATTTCGTCAAACGGGTACGGTGCAAGTGGGAAGAGGAGTTTGAGGGAGTGGGTTGAGTTATGCGGCGAGGCACTTTCAACTGCGTTTCCTTTGTGGGTGACGATTGGGTGCGTGTTGGGATTGGTGAGACCCAGTTCCTTCAATTGGGTCACTCCAAAATTAAGCATTGTGGGACTCACCATAATCATGCTTGGTATGGGTATGACTCTCACACTTGATGATCTTCGTGGTGCTCTTGCTATGCCCAAAGAAGTTCTCTCTGGTTTTCTGCTTCAATATTCGGTGATGCCATTATCTGGATTCTTTGTAAGCAAACTCTTAAACCTTCCATCACATTATGCAGCAGGTTTAATATTAGTTGGCTGCTGTCCTGGTGGCACAGCTAGCAATATTGTTACATATCTTGCACGTGGAAATGTGGCCCTCTCTGTGATAATGACAGCTGCAAGCACTTTATCTGCTGTGGTCATGACTCCTTTCTTGACAGCCAAACTTGCTGGTAAGTATGTAGCTGTGGATGCAGCTGGTTTGTTGACTTCAACATTGCAAGTTGTGCTCTTACCTGTATTGGCTGGTGCATTTCTGAATCAGTACTTCCAACCTCTTGTTAAGTTAGTTTCTCCTCTAATGCCACCCATGGCTGTAGCAACCGTTGCGATTTTATGCGGAAATGCAATTGCTCAGAGTTCTTCAGCTATCCTTATGTCCGGTGGACAAGTAGTTTTAGCCTGCATGCTTCTTCATGCTTCCGGTTTTTTCTTTGGATATGTACTTGCAAGAATGCTCAAGTTAGACGTGTCATCGTCACGAACCATATCAATCGAGGTTGGCATGCAGAACTCGGTGCTTGGAGTTGTTCTAGCTACTCAGCACTTTGGGGATCCCCTAACTACAGTACCATGTGCTGTTTCGAGTGTGTGTCACTCGATCTTCGGTAGTATTCTTGCTGGAATTTGGAGACGCTCGGTGCCAGCTGAGATGAAGGACTGA 1233 0.4574 MQASLACYSRPHGNPLVKLNLQTSSHTTTNSYNLLPSITSHTPISLPLKLQPQILLSPSPLLPKPKSNRTLSSKVGPLGCGISSNGYGASGKRSLREWVELCGEALSTAFPLWVTIGCVLGLVRPSSFNWVTPKLSIVGLTIIMLGMGMTLTLDDLRGALAMPKEVLSGFLLQYSVMPLSGFFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYLARGNVALSVIMTAASTLSAVVMTPFLTAKLAGKYVAVDAAGLLTSTLQVVLLPVLAGAFLNQYFQPLVKLVSPLMPPMAVATVAILCGNAIAQSSSAILMSGGQVVLACMLLHASGFFFGYVLARMLKLDVSSSRTISIEVGMQNSVLGVVLATQHFGDPLTTVPCAVSSVCHSIFGSILAGIWRRSVPAEMKD* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1944 410 Pfam Sodium Bile acid symporter family 138 312 IPR002657 GO:0016020
Amo18g1944 410 PANTHER SODIUM-BILE ACID COTRANSPORTER 56 410 IPR004710 -
Amo18g1944 410 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED 56 410 - -
Amo18g1944 410 Gene3D - 95 403 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1944 Amo-Chr18 45914881 45918949 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1944 80 410 Organic Solute Cotransporters AT1G78560 78.852 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1944 K03453 - pvy:116112874 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1944 18 45914881 45918949 Amo18g1944 18 45914881 45918949 ECH
Amo18g1944 18 45914881 45918949 Amo07g2217 07 67144606 67147970 hybridization