Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1748 ATGGCTTCTACTTCCATTAACACTTTCACTGGTTTTGTTGGATGGAAATCTTCTTCTTTGTTTCCACATTCTAATGCCTTAAACGCTACACTCTCACTCCCTTTCAACCCAAAACGGCACTTCTCCGTTACTTGCTCCGCCTCTTCTTCCGATCCTCTGCTGGTGAAGGCTGCCAGAGGAGAACCTGTTAGTCGGCCACCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAATATCCATCCTTTCGAGAGAGGTCGGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAATGCCTTTAGGCCTGATGGAGTGATCATTTTCTCTGACATCCTTACGCCTCTTCCTGCATTTGGGGTCGAATTCGACATTGAAGATGTAAGGGGTCCTGTTATTCAGTCCCCAATACGCTCCGAGGAGGGATTAAAGGCTCTGCATCCAATTGACCTGGAAAAGCTCAGTTTTGTTGGAGATTCACTCAAGATACTGCGCAGGGAGGTTGGTGGTGATGCTGCCGTTTTAGGTTTCGTGGGAGCACCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACGACACGCACCTATACAACCATTAAGAGTATGTGCCATACAGCGCCACATTTATTGCGGACTCTACTCTCTCATTTGGCGCAAGCAATAGCAGATTATGTTGTTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGATATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAGATTTGGTCAAGAAAAGATGCCCCGAGACACCGATTGTTCTTTATATAAATGGAAATGGTGGCCTCCTTGAGCGTATGAAAGATACTGGAGTTGATGTTATTGGCCTGGACTGGACTGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGAATAGGTGTGCAGGGAAATGTGGACCCTGCCTACTTATTCTCCCCACTTCCTGCCCTCGCTGAAGAAATTCAGAGGGTTGTGAGGTGTGCCGGGCCTAGACGGCACATCCTTAATCTCGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTTGCTAGGAGCTTGAAGTTTGATACACTTTTTCAAAACAAATCTGCAGAAGATCCTAGATTGGTAGCTTAA 1224 0.4649 MASTSINTFTGFVGWKSSSLFPHSNALNATLSLPFNPKRHFSVTCSASSSDPLLVKAARGEPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWNAFRPDGVIIFSDILTPLPAFGVEFDIEDVRGPVIQSPIRSEEGLKALHPIDLEKLSFVGDSLKILRREVGGDAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHLLRTLLSHLAQAIADYVVFQVESGAHCIQIFDSWGGQLPPDMWERWSKPYIKEIVDLVKKRCPETPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLPALAEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTLFQNKSAEDPRLVA* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1748 407 Pfam Uroporphyrinogen decarboxylase (URO-D) 53 388 IPR000257 GO:0004853|GO:0006779
Amo18g1748 407 TIGRFAM hemE: uroporphyrinogen decarboxylase 54 387 IPR006361 GO:0004853|GO:0006779
Amo18g1748 407 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 186 202 IPR000257 GO:0004853|GO:0006779
Amo18g1748 407 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 67 76 IPR000257 GO:0004853|GO:0006779
Amo18g1748 407 CDD URO-D 56 388 IPR006361 GO:0004853|GO:0006779
Amo18g1748 407 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 390 IPR006361 GO:0004853|GO:0006779
Amo18g1748 407 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 17 402 - -
Amo18g1748 407 Gene3D - 43 391 IPR038071 -
Amo18g1748 407 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 17 402 - -
Amo18g1748 407 SUPERFAMILY UROD/MetE-like 53 389 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1748 Amo-Chr18 36361190 36364438 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1748 K01599 - gmx:100807032 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1748 18 36361190 36364438 Amo18g1748 18 36361190 36364438 ECH
Amo18g1748 18 36361190 36364438 Amo07g2344 07 70073245 70076594 hybridization