Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2344 GCGAGTTATGTATGTTCCCTGTGTGAAACTGAACCCAAACAGAAAGGGGATAAGGAGCAAGAGCGAGCAACGAAAGAAGAGAGAAAGAAAAAAACATGGCTTCCACTTCCATTAACACTTTCACTGGTTTTGTTGGATGGAAATCTTCTTCTTGTTTCACATTCTAATGCCTTAAACGCTACACTCTCACTCCCTTTCAAACCAAAACCGCACTTCTCCGTCACTTGCTCTGCCTCTTCTTCCGATCCTCTGCTGGTGAAGGCTGCCAGAGGAGAACCTGTTAGTCGGCCACCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAATATCCATCCTTTCGAGAGAGGTCGGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAATGCCTTTAGGCCTGATGGAGTGATCATTTTCTCTGACATCCTTACGCCTCTTCCTGCATTTGGGGTCGAATTCGACATTGAAGACGTAAGGGGTCCTGTTATTCAGTCCCCAATACGCTCCGAGGAGGGACTAAAGGCTCTGCATCCAATTGACCTGGAAAAGCTCAGTTTTGTTGGAGATTCACTCAAGATACTGCGCAAGGAGGTTGGTGGTGATGCTGCCGTTTTAGGTTTTGTGGGAGCACCTTGGACAATAGCAACATATATAGTGGAAGGGGGTACAACACGCACCTATACAACCATTAAGAGTATGTGCCATACAGCACCACATTTATTGCGGACTCTGCTCTCTCATTTGGCGCAAGCAATAGCAGATTATGTTGTTTTCCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGATATGTGGGAATGCTGGTCAAAGCCTTATATCAAAGAGATTGTAGATTTGGTCAAGAAAAGATGCCCCGAGACACCGATTGTTCTTTATATAAATGGAAATGGTGGCCTGCTTGAGCGTATGAAAGATACTGGAGTTGATGTTATTGGGCTGGACTGGACTGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGAATAGGTGTGCAGGGAAATGTGGACCCTGCCTACTTATTCTCCCCACTTCCTGCTCTCACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCTGGGCCTAGACGGCACATCCTTAATCTCGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTTGCTAGGAGCTTGAAGTTTGATACACTTTTTCAAAACAAATCTGCAGAAGATCCTAGATTGGTAGCTTAA 1317 0.4586 ASYVCSLCETEPKQKGDKEQERATKEERKKKTWLPLPLTLSLVLLDGNLLLVSHSNALNATLSLPFKPKPHFSVTCSASSSDPLLVKAARGEPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWNAFRPDGVIIFSDILTPLPAFGVEFDIEDVRGPVIQSPIRSEEGLKALHPIDLEKLSFVGDSLKILRKEVGGDAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHLLRTLLSHLAQAIADYVVFQVESGAHCIQIFDSWGGQLPPDMWECWSKPYIKEIVDLVKKRCPETPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLPALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTLFQNKSAEDPRLVA* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2344 438 Hamap Uroporphyrinogen decarboxylase [hemE]. 81 421 IPR006361 GO:0004853|GO:0006779
Amo07g2344 438 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 70 433 - -
Amo07g2344 438 SUPERFAMILY UROD/MetE-like 84 420 IPR038071 -
Amo07g2344 438 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 217 233 IPR000257 GO:0004853|GO:0006779
Amo07g2344 438 CDD URO-D 87 419 IPR006361 GO:0004853|GO:0006779
Amo07g2344 438 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 98 107 IPR000257 GO:0004853|GO:0006779
Amo07g2344 438 TIGRFAM hemE: uroporphyrinogen decarboxylase 85 418 IPR006361 GO:0004853|GO:0006779
Amo07g2344 438 Pfam Uroporphyrinogen decarboxylase (URO-D) 84 419 IPR000257 GO:0004853|GO:0006779
Amo07g2344 438 Gene3D - 74 422 IPR038071 -
Amo07g2344 438 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 70 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2344 Amo-Chr7 70073245 70076594 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2344 K01599 - gmx:100807032 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1748 18 36361190 36364438 Amo07g2344 07 70073245 70076594 hybridization