Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1678 ATGGCGTCATACAATAGAGGGGACGATGACTATGACTACCTATTCAAGCTGGTTCTCATCGGTGACTCTGGCGTCGGAAAATCCAACCTCCTCTCCCGCTTCACCCGCAACGAGTTCAACCTCGAATCCAAGTCCACTATCGGCGTTGAATTCGCCACCAGAACCATCACCGTCGATGATAATAAGGTCCTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGATATCGCGCAATCACAAGTGCCTACTACCGAGGAGCTGTTGGTGCCTTACTAGTTTATGATGTCACGCGACATATTACATTTGAGAATGTTGAGAGATGGTTGAAGGAGTTGAGAGATCACACGGATGCCAACATCATAGTAATGCTCGTTGGCAATAAAGCAGACCTGCGTCACCTTCGAGCCGTGTCTACCGAAGATGCAACAGCATTCGCCGAAAGGGAGAACATCTTTTTCATGGAGACTTCAGCCCTTGAGTCTATGAATGTTGACAATGCATTCACCCAAGTGTTGACACAAATATATCGTTTGATGACTCGGAAAGCGCTCGAAGCTGGGAACGATCCTGCAGGATTGCCTCAAGGGCAAACGATAAGTGTGGGAAACAAGGATGATGTTTCGGCTGTTAAGAAAGTTGGTTGCTGCTCTGAGTGA 660 0.4788 MASYNRGDDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRTITVDDNKVLKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHITFENVERWLKELRDHTDANIIVMLVGNKADLRHLRAVSTEDATAFAERENIFFMETSALESMNVDNAFTQVLTQIYRLMTRKALEAGNDPAGLPQGQTISVGNKDDVSAVKKVGCCSE* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1678 219 ProSiteProfiles small GTPase Ras family profile. 3 219 IPR001806 GO:0003924|GO:0005525
Amo18g1678 219 SMART ras_sub_4 12 179 - -
Amo18g1678 219 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 217 - -
Amo18g1678 219 Gene3D - 7 217 IPR027417 -
Amo18g1678 219 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Amo18g1678 219 SMART rab_sub_5 15 179 - -
Amo18g1678 219 SMART ran_sub_2 20 218 - -
Amo18g1678 219 PANTHER DRAB11-RELATED 1 217 - -
Amo18g1678 219 CDD Rab11_like 12 177 - -
Amo18g1678 219 ProSiteProfiles small GTPase Rho family profile. 8 188 - -
Amo18g1678 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 185 IPR027417 -
Amo18g1678 219 TIGRFAM small_GTP: small GTP-binding protein domain 13 172 IPR005225 GO:0005525
Amo18g1678 219 PRINTS Transforming protein P21 ras signature 15 36 - -
Amo18g1678 219 PRINTS Transforming protein P21 ras signature 38 54 - -
Amo18g1678 219 PRINTS Transforming protein P21 ras signature 57 79 - -
Amo18g1678 219 PRINTS Transforming protein P21 ras signature 119 132 - -
Amo18g1678 219 PRINTS Transforming protein P21 ras signature 154 176 - -
Amo18g1678 219 SMART rho_sub_3 17 175 IPR001806 GO:0003924|GO:0005525
Amo18g1678 219 ProSiteProfiles small GTPase Rab1 family profile. 10 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1678 Amo-Chr18 33964456 33968433 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1678 K07904 - egr:104450106 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0999 18 16269057 16271089 Amo18g1678 18 33964456 33968433 ECH
Amo13g2089 13 33257405 33260273 Amo18g1678 18 33964456 33968433 ECH
Amo18g1678 18 33964456 33968433 Amo18g1678 18 33964456 33968433 ECH