Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1622 ATGTTAGGAAGTAATAACAAAAGTTCCCATGGCACTGCAGCAACAACAACACCTCTCTTATTAGGTGATAGAGAAGAAGTAGAAGATGCACAGCAACAAGAACAACATGAAGAATGGTGGAAGAGAATCTTGGATATGGATGAGGCAAAGCATCAACTACTGTTTTCACTGCCCATGATTGTTACAAACTTGTTGTATTACTTAATCACTTTGGTTTCAGTAATGCTTGTTGGTCACCTTGGTGACCTTCAGCTTGCTGGTTCCACTCTTGCCAACTCATGGTTCAGTGTCACTGGTGTCTCTCTCATGGTTGGTTTGAGTGGGGCACTAGAAACACTATGTGGGCAAGGATTTGGTGCAAAAGAATATCAAATGCTGGGAATTTATCTACAATCTTCATGCATCATATCCTTTGTTTTCTCCATCATCATATCCATAATTTGGTTCTACACACAACATATCTTAGTACTACTTCACCAATCCCAAGACATATCAAAAACAGCAGCACTCTACATGAAGTTCTTTTTTCCAGGCTTATTTGCATATGGATTCTTGCAAAACATTCTTAGGTTTCTCCAAACACAATCTGTTGTGACACCATTGGTTATTCTCTCAGCTATCCCATTGTTGATCCACATTGGTATTGCATATACATTGGTTGAGAAGACAGGTTTGGGTTTTGTTGGTGCACCTATTTCAGCTTCAATTTCACTATGGATAGCTATTGTTTTGTTGGCTTTGTATGTTATGTATGGAAAGAACTTCAAGTTGACATGGGAAGGGTTTTCTACTCAATCTTTTCATTATGTATTCCCTAGCCTTAAACTTGCTCTGCCCTCTGCAGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAGTCTTGGTTTTCTTAGCTGGAATAATGCCTGATTCAGAAATAACCACTTCCTTGATTGCAATATGTGCCAATACAGAATTCATTGCATACATGATAACTTATGGTCTCAGTGCTGCTGCAAGCACCCGAGTTTCGAACGAACTGGGAGCCGGCCACCCGGACCAGGCGATTCGCGCGATGAGAGTGACTCTCACTCTCTCAGTTCTGCTTGGTTTGTGCTTTGTTTTGGCACTTGTATTTGGTCATAATATATGGATTCAAATGTTCAGTAGCAGTTCTAAAATAAAGGAGGAGTTTGCTTCAATAACACCCTTACTAGCAATATCTATATTACTAGATGCTGTCCAAGGTGTCTTATCAGGGGTGATTAGAGGATGTGGTAGGCAGCACTTGGCTGCATATGTAAACCTTGTAACTTTTTATCTCATTGGTTTACCAATATCATGTCTCCTTGGATTTAAGACCAATTTGCAATTCAAGGGTTTATGGATAGGGTTGATTTGTGGGCTTGTTTGTCAAACTGGAGCACTATTATTTTTCACATGGCGTGCCAATTGGTCCAAACTCCATCTCTCTCTGGACAAAATTAGACACAATGATCAACCAATTGTTGTTTAA 1494 0.3983 MLGSNNKSSHGTAATTTPLLLGDREEVEDAQQQEQHEEWWKRILDMDEAKHQLLFSLPMIVTNLLYYLITLVSVMLVGHLGDLQLAGSTLANSWFSVTGVSLMVGLSGALETLCGQGFGAKEYQMLGIYLQSSCIISFVFSIIISIIWFYTQHILVLLHQSQDISKTAALYMKFFFPGLFAYGFLQNILRFLQTQSVVTPLVILSAIPLLIHIGIAYTLVEKTGLGFVGAPISASISLWIAIVLLALYVMYGKNFKLTWEGFSTQSFHYVFPSLKLALPSAAMVCLEYWAFEVLVFLAGIMPDSEITTSLIAICANTEFIAYMITYGLSAAASTRVSNELGAGHPDQAIRAMRVTLTLSVLLGLCFVLALVFGHNIWIQMFSSSSKIKEEFASITPLLAISILLDAVQGVLSGVIRGCGRQHLAAYVNLVTFYLIGLPISCLLGFKTNLQFKGLWIGLICGLVCQTGALLFFTWRANWSKLHLSLDKIRHNDQPIVV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1622 497 PANTHER PROTEIN DETOXIFICATION 27 488 - -
Amo18g1622 497 MobiDBLite consensus disorder prediction 1 16 - -
Amo18g1622 497 MobiDBLite consensus disorder prediction 1 32 - -
Amo18g1622 497 CDD MATE_eukaryotic 48 480 IPR045069 GO:0042910|GO:1990961
Amo18g1622 497 TIGRFAM matE: MATE efflux family protein 58 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo18g1622 497 Pfam MatE 279 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo18g1622 497 Pfam MatE 58 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo18g1622 497 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1622 Amo-Chr18 31837534 31842046 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1622 K03327 - gmx:100816310 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1622 18 31837534 31842046 Amo18g1622 18 31837534 31842046 ECH
Amo18g1622 18 31837534 31842046 Amo08g1627 08 26741935 26745698 hybridization