Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1627 ATGTTAGGAAGTAAAAACAAAAGTTGCCATGGCAGTGCAGCAACAACAACACCTCTCTTATTAGGTGATAGAGAAGAAGTAGAAGATGCACAACATGAAGAATGGTGGAAGAGAATCTTGGATATGGATGAGGCAAAGCATCAACTACTGTTTTCACTGCCCATGATTGTTACAAACTTGTTGTATTACTTAATCACTTTGGTTTCAGTAATGCTTGTTGGTCACCTTGGTGACCTTCAGCTTGCTGGTTCCACTCTTGCCAACTCATGGTTCAGTGTCACTGGTGTCTCTCTCATGGTTGGTTTGAGTGGGGCACTAGAAACACTATGTGGGCAAGGATTTGGTGCAAAAGAATACCAAATGCTGGGAATTTATCTACAATCTTCATGCATCATATCCTTTGTTTTCTCCATCATCATATCCATAATTTGGTTCTACACACAACATATCTTAGTACTACTTCACCAATCCCAAGACATAGCAAAAACAGCAGCACTTTACATGAAGTTCTTTTTCCCAGGCTTATTTGCATATGGATTCTTGCAAAACATTCTTAGGTTTCTCCAAACACAATCTGTTGTGACACCATTGGTTATTCTCTCAGCTATCCCATTGTTGATCCACATTGGCATTGCATATGTATTAGTTGAGAAGACAGGTTTGGGTTTTGTTGGTGCACCTATTTCAGCTTCAATTTCACTATGGATAGCTATTGTTTTGTTGGCTTTGTATGTTATTTATGGAAAGAACTTCAAGTTGACATGGGAAGGGTTTTCTACTCAATCTTTTCATTATGTATTGCCTACCCTTAAACTTGCTCTGCCCTCTGCAGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAGTCTTGGTTTTCTTAGCTGGAATAATGCCTGATTCAGAAATAACCACTTCCTTGATTGCAATATGTGCCAATACAGAATTCATTGCATACATGATCACTTATGGTCTCAGTGCTGCTGCAAGCACCCGAGTTTCGAACGAACTGGGAGCCGGCCACCCGGACCGGGCGAATCACGCCATGAGAGTGACTCTCACTCTCTCAGTTCTGCTTGGTTTGTGCTTTGTTTTGGCACTTGTGTTTGGTCATAATATATGGATTCAAATGTTCAGTAGCAGTTCTAAAATAAAGGAGGAGTTTGCTTCAATAACACCCTTACTTGCAATATCTATATTACTAGATGCTGTCCAAGGTGTCTTATCAGGGGTGATTAGAGGATGTGGTAGGCAGCACTTGGCTGCATATGTAAACCTTGCAACTTTTTATCTCATTGGTTTACCAATATCATGTCTCCTTGGATTTAAGACCAATTTGCAATTCAAGGGTTTATGGATAGGGTTGATTTGTGGGCTGGTTTGTCAAAGTGGAGCACTATTATTTTTCACATGGCGTGCCAATTGGTCCAAACTCCATCTCTCTCTGGACAAAATTAGACACAATGATCAACCAATTGTTGTTTAA 1482 0.4015 MLGSKNKSCHGSAATTTPLLLGDREEVEDAQHEEWWKRILDMDEAKHQLLFSLPMIVTNLLYYLITLVSVMLVGHLGDLQLAGSTLANSWFSVTGVSLMVGLSGALETLCGQGFGAKEYQMLGIYLQSSCIISFVFSIIISIIWFYTQHILVLLHQSQDIAKTAALYMKFFFPGLFAYGFLQNILRFLQTQSVVTPLVILSAIPLLIHIGIAYVLVEKTGLGFVGAPISASISLWIAIVLLALYVIYGKNFKLTWEGFSTQSFHYVLPTLKLALPSAAMVCLEYWAFEVLVFLAGIMPDSEITTSLIAICANTEFIAYMITYGLSAAASTRVSNELGAGHPDRANHAMRVTLTLSVLLGLCFVLALVFGHNIWIQMFSSSSKIKEEFASITPLLAISILLDAVQGVLSGVIRGCGRQHLAAYVNLATFYLIGLPISCLLGFKTNLQFKGLWIGLICGLVCQSGALLFFTWRANWSKLHLSLDKIRHNDQPIVV* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1627 493 CDD MATE_eukaryotic 44 476 IPR045069 GO:0042910|GO:1990961
Amo08g1627 493 PANTHER PROTEIN DETOXIFICATION 25 484 - -
Amo08g1627 493 TIGRFAM matE: MATE efflux family protein 54 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo08g1627 493 Pfam MatE 54 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo08g1627 493 Pfam MatE 275 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo08g1627 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1627 Amo-Chr8 26741935 26745698 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1627 K03327 - gmx:100816310 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1622 18 31837534 31842046 Amo08g1627 08 26741935 26745698 hybridization