Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1539 ATGGGCTGGATTAAAAGGAAATGTGTGTGGGGACAAGCATGCAGGGCTTCAGAAGTTGAGCTATTGTACTGGCTAAATCCTAATCAGGTATATCAAAGTGGATTGAAGGATAGCAAGCTAAAACTGGTCGACGCTCGCAGCATATGCTTGTTGGACTGCCCTGTACCTTCTGAAGATTCACTTAATTGGGTGTGTGATTATCCCGAAGGAGACATTCGTCTTAGTATGGATGATTGGATTGATAGCAACTATAATTATTATGAGTACCTTACACCGGAAATGAGAAACTCCTCTCTTCAACTTCAGGGCCCCTGTTATCCTGTCATATTTCCTAGTGTAAATGTTTACTGGACTTGCCAATTCATTGCTCGTGCATCAAATGTGTCATTAAACCATTGGCAGCAGATGGGTGGAGTTAGCATCAATGAAGACATTGTTATTGATAAGTCTATTCACAAGTATATCAACTCTCGGTCAGCCGTCTTAAAGAGATACATGGCTGACATAGGAAAGTCATGGCCTGTGCTGATTGTTTGTGGGGGGATTATACCTCTTTTTCTATCCGTGATTTGGCTGCTGATGATTCGGTATTTTGTCACTGCAATGCCTTGGGTGACAGTGGTTTTCTTTAATCTCCTAATGGTATCAGTCACAATGTTCTACTACCTGAAAGTTGGATGGATAGGAAATAATGCTATTTCCCCCATCATTGGCGAGCATGATCCTTACATTCATGTATCTGGGAGGGAGCTGACTCATCTACGCATTGGCACTATAATGATGACATTTATAACAATTGTTGCAATTCTGACATCAATTGCTATTGTCCGACGCATCCTTATGGGAACTTCTGTCCTTAAGGTTGCTGCAAAAGTGATAGGAGAAGTTCGAGCGCTCATCACTTTTCCAGTCATACCGTATTGTATTCTTGCAGTGTTCTACATGTTCTGGATTTCTGCTGCTCTCCATTTGTTCAGCTCTGGTCAGGTTGTTCAAAACAACTGTAATTCTAATTGCTGCGCATATGATCTCCTTGAGAAAAAGGTGAACTGTGATCGTTGTTGCGGATATAGCATTCGTTACACACCACATATTGGAATCGCCATCCTTTTTCATCTATTTGGGTGTTACTGGGCCACACAATTCTTCATAGCATGCTCATCAACAGTGATTGCTGGATCTGTTGCCTCTTATTATTGGGCACGTGGTGAAAATTCTCAAGAAATCCCTCTTCTTTCAGTCATTTCCTCCATGAAGAGGCTTATGCGTTACAATCTGGGTTCTGTGGCTCTTGGCTCTCTGACTGTATCATTTGTAGAGTCGATCCGCCTTTTGCTTGAATCCATGCGTCGCAAACTAAAAGTCTCCAGTTATGAGCCTGACAACTGGATTGGCAAGGCTGCATACCGATCTTCTCAATTTTTTCTAAGGTGTATTGGATGGATCATCAAATCAGTGAATCGAAATGCATACATAATCATTGCTATAACAGGTGAAAGTTTCTTCAGATCTTCTGCTATTGCAACAGAATTGATTATGAATAACATCCTGCGGATCGGACGTGTCAATGTGATTGGAGATGTTATTTTGTTCCTTGGAAAACTATGTGTTAGTCTCTCAAGTGCTGTTTTTGCATTCCTCATGTTGGATACACACAAGTATAGAGCTGCACATAACAAGATCACATCCCCACTCTTGCCTGTTCTGGTTTGCTGGGTTCTTGGGTACATTGTTGCAACGCTTTTCTTTGGAGTTGTCGAGATGTCAATTGATACCATCATTCTCTCATACTGCCAGGATTCAGAAGAGAATGGAACAGCACAGTATGCTCCACCCCTTCTCATGGAAACTCTCAACAATGACCAAAATGAGACGCAAAGGCTTACACAAGGATCCCAATGA 1902 0.418 MGWIKRKCVWGQACRASEVELLYWLNPNQVYQSGLKDSKLKLVDARSICLLDCPVPSEDSLNWVCDYPEGDIRLSMDDWIDSNYNYYEYLTPEMRNSSLQLQGPCYPVIFPSVNVYWTCQFIARASNVSLNHWQQMGGVSINEDIVIDKSIHKYINSRSAVLKRYMADIGKSWPVLIVCGGIIPLFLSVIWLLMIRYFVTAMPWVTVVFFNLLMVSVTMFYYLKVGWIGNNAISPIIGEHDPYIHVSGRELTHLRIGTIMMTFITIVAILTSIAIVRRILMGTSVLKVAAKVIGEVRALITFPVIPYCILAVFYMFWISAALHLFSSGQVVQNNCNSNCCAYDLLEKKVNCDRCCGYSIRYTPHIGIAILFHLFGCYWATQFFIACSSTVIAGSVASYYWARGENSQEIPLLSVISSMKRLMRYNLGSVALGSLTVSFVESIRLLLESMRRKLKVSSYEPDNWIGKAAYRSSQFFLRCIGWIIKSVNRNAYIIIAITGESFFRSSAIATELIMNNILRIGRVNVIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRAAHNKITSPLLPVLVCWVLGYIVATLFFGVVEMSIDTIILSYCQDSEENGTAQYAPPLLMETLNNDQNETQRLTQGSQ* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1539 633 Pfam Plasma-membrane choline transporter 259 602 IPR007603 GO:0022857|GO:0055085
Amo18g1539 633 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 17 630 IPR007603 GO:0022857|GO:0055085
Amo18g1539 633 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 17 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1539 Amo-Chr18 30143450 30148085 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1539 K15377 - gmx:100789185 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1539 18 30143450 30148085 Amo18g1539 18 30143450 30148085 ECH
Amo18g1539 18 30143450 30148085 Amo08g1566 08 25753839 25758415 hybridization