Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1296 ATGCCTGAGGCACCAAAAGAGTATGACCTGGCGGGGGAGAACAGGAGGGTCCTGGACTTCATCGAGTATGTCACTGCAAACGCCGATGCGGTGCAGAGAGACATACTCGGTGAGATTCTGTCCCGTAATGTCGGTGTAGAGTATCTACGCCGGCATGGCCTTGAAGGCCGCACGGACCGGGACACCTTCAAGAAGCTTCTCCCCGTCATAACTTACGAGGACATCCAACAAGATGTTCTTCGCATAGCCAATGGAGACACTTCTCCAATACTCACTTCAAAGCCTATCTCAGAGTTTCTCACTAGCTCTGGGACATCAGGAGGAGAGAGAAAGCTGATGCCAACAATTGAAGAAGAGCTAGGAAGAAGGTGCTTGCTTTATAGCCTATTAATGCCAATAATGAGTCAATTTGTGCCTGACCTAGAAAAGGGCAAAGGCATGTACCTTATGTTCATAAAATCCGAGTCTTGGACACCTGGGGGGATAGTGGCTCGGCCAGTCCTCACAAGCTACTACAAGAGCCCTTATTTTAAGGACAGACCCTATGACCCATACACTAACTACACAAGCCCAAATGAAACCGTCCTTTGCCCTGATTCCTACCAAAGCATGTACTCACAACTTCTTTGTGGCCTTTGCCAAAACAAAGAAGTTGTGAGGGTTGGAGCTGTTTTTGCTTCCGCTTTTATTAGGGCCATAAGGTTTCTTGAGAAACATTGGGTCCTACTTTGTAACGACATAAGGACCGGATCTCTAAATCCCAATATCATCTCTGACCAGACAGTCAGAGACGCCGTGAAAAAGATTCTTGATAAACCCAATCCGTATCTTGCGGATTTTATCGAGAGTGAGTGTAGTAAGAGTTCYTGGCAYGGGATTATCACGAGATTGTGGCCCAACACAAAGTATGTGGATGTTATTGTGACYGGAACTATGTCACAATATATACCAACATTGGATTACTATAGCAATGGGCTACCACTTGTGTGTACCATGTATGCATCAAGTGAGTGTTACTTTGGTGTGAATCTAAATCCTCTTTGCAAACCAAGTGAGGTGTCCTACACCCTCATCCCTTCAATGTGCTACTATGAGTTTTTGCCGGTTAACCGGAGCGACGAGGTCACCGGTTCGCTTCACATGCCAAAATCGCTCAATGAGAAGGAGCAACAGGAGCTGGTGGAGCTTGTGGATGTTAAGCTTGGCCAAGAATATGAGCTTGTGGTCACAACTTTTTCCGGCCTCTATAGGTATAGAGTGGGTGATGTCCTAAGGGTGTCTGGATTCAAGAACAAGGCGCCACAATTCAACTTCGTCTGCCGGAAAAATGTTGTCCTAAGCATAGATTCCGACAAGACCGATGAGACGGAACTCCAAAATGCCATGAAAAATGCCGTGACACACCTCCTCCCCTTCGATGCGGCGGTGGTCGAATACACCAGTTATGCGGACACCACAACCATCCCGGGCCACTATGTGCTCTATTGGGAACTCACTCTAAACGGTGGGACACCAATCCCACCGTGCGTGTACGAGGATTGCTGTCTTGCCGTAGAGGAGTCCCTCAACAGTGTGTACCGGCAAGGACGTGTGTCCGACAAGTCGATTGGGCCACTCGAAATAAGGATTGTGGAGCAAGGAACCTTTGATAAGCTCATGGACTATGCCATAAGCTTAGGTGCATCAATTAACCAATATAAGGCACCTAGGTGTGTTAAGTTTCCACCTGTGCTGGAGCTATTGAACTCAAGGGTGGTTGAAAGGTTCTTTAGCCCAAAATGTCCAAAATGGGTCCCCGGACACAAGCAATGGAGCAATGGTCAGAACTGA 1830 0.4743 MPEAPKEYDLAGENRRVLDFIEYVTANADAVQRDILGEILSRNVGVEYLRRHGLEGRTDRDTFKKLLPVITYEDIQQDVLRIANGDTSPILTSKPISEFLTSSGTSGGERKLMPTIEEELGRRCLLYSLLMPIMSQFVPDLEKGKGMYLMFIKSESWTPGGIVARPVLTSYYKSPYFKDRPYDPYTNYTSPNETVLCPDSYQSMYSQLLCGLCQNKEVVRVGAVFASAFIRAIRFLEKHWVLLCNDIRTGSLNPNIISDQTVRDAVKKILDKPNPYLADFIESECSKSSWHGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPSMCYYEFLPVNRSDEVTGSLHMPKSLNEKEQQELVELVDVKLGQEYELVVTTFSGLYRYRVGDVLRVSGFKNKAPQFNFVCRKNVVLSIDSDKTDETELQNAMKNAVTHLLPFDAAVVEYTSYADTTTIPGHYVLYWELTLNGGTPIPPCVYEDCCLAVEESLNSVYRQGRVSDKSIGPLEIRIVEQGTFDKLMDYAISLGASINQYKAPRCVKFPPVLELLNSRVVERFFSPKCPKWVPGHKQWSNGQN* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1296 609 Pfam GH3 auxin-responsive promoter 21 573 IPR004993 -
Amo18g1296 609 PANTHER - 7 605 - -
Amo18g1296 609 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 7 605 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1296 Amo-Chr18 23137414 23140852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1296 9 591 EF-hand Containing Proteins AT1G23160 48.900 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1296 K14487 - gmx:100791987 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1296 18 23137414 23140852 Amo18g1296 18 23137414 23140852 ECH
Amo18g1296 18 23137414 23140852 Amo08g1443 08 23490769 23494212 hybridization