Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1212 ATGGATTATGAACCTCCATTCCTAGAAACCTACAAGACCCTTTTGCAAGAAGAAGATTCAAACCGCAATAATGACTTGTTACTGGTGGAGAATTTTGATGATGAGATAGAGCTACCTTTGATTGATCTTAACCGGTTGAATGAAAATAATCTTGATGAGAGAGATGAGTGCATGGAAGAGATAAGTGATGCTGCAAGGAGATGGGGTTTCTTTCAGATTGTGAATCATGGTATTTCAAAGGATCTTCTTGGTATGATGCTGTTTGAGCAAATGAAACTGTTCTATCAACCTTTTGTGAAAAAATCTTCAGATAATTTTCTTGGTTTGCCTCCAAGAACTTATAGATGGGGAAACCCATCTGCTACTAATTTGAAGCAATTGTTATGGTCCGAAGCATTTCATTTTCCTATTTCAGATATATCAATGATGGACAACCAGCACAAAAGTCTCAGATGGAACATTGAAGCCCTTGCAGCAGCAGCAGTTACCCCACTAGCCCAATGCTTGGCAGAAACTTTGGCTTGCAAAATGAAGATGATTATGAAATCCAAGAATTATTTCAAAGAGAATTGTTTTCAAGAAAGTTCTATAATTAGACTGAATAGATATCCTCCATGTCCAAAACTATTATCTTCAAAGTTATATGGACTTATGCCCCACAATGACTCAAGTTTTCTTAGTATTGTTTATCAGGACCATGTAGGAGGATTGGAATTATTAAAAGATGGAAAATGGATTCGTGTGAAGCCTAATCCAGGAGCTCTGGTTATCAACATTGGAGATTTATTTCAGGCATTGAGCAATGGTATATACAAAAGTATAAAACACAGAGTGGTAGTTTCCCAAAAGGAAGAGAGGTACTCAGTAGCATTCTTCTATTGCCCTTTGTTGGAGACATTGATACAAAGTCATAGCCATACCAAGCCAGCTATGTACAAAAATTTCACTTTTAGAGAATATAGAGAGCAAAATGAGAAAGCTGTCAAACAAACTGGTGATAAAATCGGGCTCTCTAAATTTCTTTTATAG 1029 0.3654 MDYEPPFLETYKTLLQEEDSNRNNDLLLVENFDDEIELPLIDLNRLNENNLDERDECMEEISDAARRWGFFQIVNHGISKDLLGMMLFEQMKLFYQPFVKKSSDNFLGLPPRTYRWGNPSATNLKQLLWSEAFHFPISDISMMDNQHKSLRWNIEALAAAAVTPLAQCLAETLACKMKMIMKSKNYFKENCFQESSIIRLNRYPPCPKLLSSKLYGLMPHNDSSFLSIVYQDHVGGLELLKDGKWIRVKPNPGALVINIGDLFQALSNGIYKSIKHRVVVSQKEERYSVAFFYCPLLETLIQSHSHTKPAMYKNFTFREYREQNEKAVKQTGDKIGLSKFLL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1212 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 193 295 IPR005123 -
Amo18g1212 342 Pfam 2OG-Fe(II) oxygenase superfamily 197 295 IPR044861 -
Amo18g1212 342 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 27 336 - -
Amo18g1212 342 Gene3D - 9 330 IPR027443 -
Amo18g1212 342 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 27 336 - -
Amo18g1212 342 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 136 IPR026992 -
Amo18g1212 342 SUPERFAMILY Clavaminate synthase-like 26 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1212 Amo-Chr18 21057531 21061807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1212 35 322 Glycosyltransferase AT5G59530 28.981 2.80e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1212 - K04125 lja:Lj0g3v0081939.2 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1212 18 21057531 21061807 Amo18g1212 18 21057531 21061807 ECH
Amo18g1212 18 21057531 21061807 Amo08g1400 08 22828959 22833723 hybridization