Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1400 ATGGATTATGAACCTCCATTCCTAGAAACCTACAAGACCCTTTTGCAAGAAGAAGATTCAAACCGCAATAATGACTTGTTACTGGTGGAGAATTTTGATGATGAGATAGAGCTACCTTTGATTGATCTTAACCGGTTGAATGAAAATAATCTTGATGAGAGAGATGAGTGCATGGAAGAGATAAGTGATGCTGCAAGGAGATGGGGTTTCTTTCAGATTGTGAATCATGGTATTTCAAAGGATCTTCTTGGTATGATGCTGTTTGAGCAAATGAAACTGTTCTATCAACCTTTTGTGAAAAAATCTTCAGATAATTTTCTTGGTTTGCCTCCAAGAACTTATAGATGGGGAAACCCATCTGCTACTAATTTGAAGCAATTATGGAACATTGAAGCCTTTGAAGCAGCAGTTACCCCACTAGCCCAATGCTTGGCAGAAATTTTGGCGTGCAAAATGAACATGATTATGAAATCCAAGAATTATTTCAAAGAGAATTGCTTTCAAAAAAGTTCTATAATTAGACTGAATAGATATCCTCCATGTCCAAAACTACTATCTTCAAAGTTATATGGACTTATGCCCCACAACGACTCAAGTTTTATTAGCATTGTTTATCAGGACCATGTAGGAGGATTGGAATTATTAAAAGATGGAAAATGGATTCATGTGAAGCCTAATCCAGGAGCTCTGGTTATCAACATTGGAGATTTATTTCAGGCATTGAGCAATGGTATATACAAAAGTATAAAACACAGAGTGGTAGTTTCCCAAAAGGAAGAGAGGTACTCAGTAGCATTCTTCTATTGCCCTTTGTTGGAGACATTGATACAAAGTCATAGCCATACCAAGCCAGCTATGTACAAAAATTTCACTTTTAGAGAATATAGAGAGCAAAATGAGAAAGCTGTCAAACAAACTGGTGATAAAATCGGGCTCTCTAAATTTCTTTTATAG 954 0.3627 MDYEPPFLETYKTLLQEEDSNRNNDLLLVENFDDEIELPLIDLNRLNENNLDERDECMEEISDAARRWGFFQIVNHGISKDLLGMMLFEQMKLFYQPFVKKSSDNFLGLPPRTYRWGNPSATNLKQLWNIEAFEAAVTPLAQCLAEILACKMNMIMKSKNYFKENCFQKSSIIRLNRYPPCPKLLSSKLYGLMPHNDSSFISIVYQDHVGGLELLKDGKWIHVKPNPGALVINIGDLFQALSNGIYKSIKHRVVVSQKEERYSVAFFYCPLLETLIQSHSHTKPAMYKNFTFREYREQNEKAVKQTGDKIGLSKFLL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1400 317 Gene3D - 9 305 IPR027443 -
Amo08g1400 317 SUPERFAMILY Clavaminate synthase-like 26 299 - -
Amo08g1400 317 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 27 136 - -
Amo08g1400 317 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 130 311 - -
Amo08g1400 317 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 27 136 - -
Amo08g1400 317 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 130 311 - -
Amo08g1400 317 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 102 IPR026992 -
Amo08g1400 317 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 169 270 IPR005123 -
Amo08g1400 317 Pfam 2OG-Fe(II) oxygenase superfamily 172 270 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1400 Amo-Chr8 22828959 22833723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1400 35 297 Glycosyltransferase AT5G59530 30.164 2.12e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1400 - K04125 lja:Lj0g3v0081939.2 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1212 18 21057531 21061807 Amo08g1400 08 22828959 22833723 hybridization