Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1003 ATGAATATATATAAAGGAGAAGAAATACAAAGTTCCTTTCAAGTTACAAGTATTCTAAAGACCATGAGACACAAGTTTTCATTCATTTACCTTGTCATATTCYTGCTCATATTACCACATTCTAATTATGGTAGACCTRTCACAAAAGAGGCACCTCTATTGATGGTTTCTGATGGAATCCATGATCATAGTAGTGAGCCTTCTCTTATTTATGTGAACAAGCTAGGTTCTTCAGATACATGCACAGAAGCTTATGGATTTTTGCCCTGTACAAATAATGCTCTAGGTAATGTGTTCCTCATGTTGGTGTATGGCTACTTTATGTTCTTGGCAGCAAAGTCATTATCAGCTGGCAGTGAGATTTTGCTTCAAATTCTTGGACCTGGCATCATTGGTGGACTATTCCTCCCTCTCTTGAGTTCTCTTCCTGATGCAACCATCATTCTTGCATCTACATTATCTGGGAACAAAGAAACAGCTCAAAGTCAGGTCTCTGTGGGAATGGGACTACTTGCTGGATCAACTGTAATGCTTCTAACTATTCTATGGGGTTCCTGTCTTATAGTTGGAAGGTGTGACCTTGAAAATTCAGTAGCAATTGATCAAAAGGATACAAAAGGCTTTGACTTAGCTGGATCTGGTGCAAGCACTGATATTTGGACAAGCTATGCTGCAATGTTGATGATAATATCTTGCATTCCACTTGTTATTGTGCAATTACCCCAAATTTTTCATGGAGCTACTCCAAGTCGCGCAGCCATTCTATTTTCGCTCATTGTCTCCATTTGTTTATTGGTTGTCTATACCATTTATCAGGTTTGTCAGCCAAGGATTCAGAGGAGAAGACTTGCATATGCCAAGTACAAGAACATAATGTCAGGATTTCTAGAACAATTGAAAACACAAACAAGAGGCCGTTTCCTCAAAGACAATGGTGAACCTCACATTGAGGTTATACAAAAGTTGTTTGACTCACTCAAGAATTCTGAAGGGTACATAACAGCCAAAGATTTAAGAGCTTTAATCATAGGAATGCACTTTGAGGAGGAAGATATGGACATTGATGAAGCTGTTGCAAGCATCATGTTGGATTTTGACAAGTCACATGACTCTAGAATTGACATGGAAGAGTTTGTGAGAGGAATAACAAGATGGCTTMGCAAAGCTAMGCGATCCGCCACACACGACAATGATCACAGTCCCACAACACCTAAGATTCTAAATGATTTCCATCAGAGGATGAAAGCAGAACAAGATGTATGGAGTGATCACAKTGATGAGGCTGTGGAGAKTGTAAAGAATCCAAGATGGAATACTTTCAAAGCAGTGTTGATGTTGCTTCTAGGAACTGCTGTGGCTGGTGTATTTGCTGATCCTCTTGTTGATTCAGTGRACAACTTCTCAGCAGCCACTAGTATCCCTTCTTTCTTTGTTTCCTTCATCATCCTTCCTTTCGCCAGCTCCAGCGAAATTGTGTCGGCTCTTATTTTCGCCAGCCGGAAGAAGATCAGAACCGCCTCACTCACATATTCTGAGATATATGGATCAGTGACAATGAGCAATCTCCTTTCATTATCAGTTTTCTTGGGTTTGGTTTACATTCAAAACCTGACATGGAGTTTCTCAGCTGAGGTTTTGATCATTCTCATTGTGTGCATAACAATGGGACTTGTTGCAAGCTTTCACACTACCTTGCCTCTATGGCTATGCTTCCCTGCCTTTGCACTTTATCCATTCTCTCTGCTTTTCGTCTATATTCTTAATTATGTTGTTGGAATACCTTAA 1785 0.3972 MNIYKGEEIQSSFQVTSILKTMRHKFSFIYLVIFLLILPHSNYGRPXTKEAPLLMVSDGIHDHSSEPSLIYVNKLGSSDTCTEAYGFLPCTNNALGNVFLMLVYGYFMFLAAKSLSAGSEILLQILGPGIIGGLFLPLLSSLPDATIILASTLSGNKETAQSQVSVGMGLLAGSTVMLLTILWGSCLIVGRCDLENSVAIDQKDTKGFDLAGSGASTDIWTSYAAMLMIISCIPLVIVQLPQIFHGATPSRAAILFSLIVSICLLVVYTIYQVCQPRIQRRRLAYAKYKNIMSGFLEQLKTQTRGRFLKDNGEPHIEVIQKLFDSLKNSEGYITAKDLRALIIGMHFEEEDMDIDEAVASIMLDFDKSHDSRIDMEEFVRGITRWLXKAXRSATHDNDHSPTTPKILNDFHQRMKAEQDVWSDHXDEAVEXVKNPRWNTFKAVLMLLLGTAVAGVFADPLVDSVXNFSAATSIPSFFVSFIILPFASSSEIVSALIFASRKKIRTASLTYSEIYGSVTMSNLLSLSVFLGLVYIQNLTWSFSAEVLIILIVCITMGLVASFHTTLPLWLCFPAFALYPFSLLFVYILNYVVGIP* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1003 594 CDD EFh 321 383 IPR002048 GO:0005509
Amo18g1003 594 Pfam Sodium/calcium exchanger protein 100 273 IPR004837 GO:0016021|GO:0055085
Amo18g1003 594 Pfam Sodium/calcium exchanger protein 442 585 IPR004837 GO:0016021|GO:0055085
Amo18g1003 594 Gene3D - 126 285 IPR044880 -
Amo18g1003 594 PANTHER ION BINDING PROTEIN, PUTATIVE-RELATED 24 588 - -
Amo18g1003 594 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 588 IPR004713 GO:0006812|GO:0008324|GO:0016021
Amo18g1003 594 ProSiteProfiles EF-hand calcium-binding domain profile. 353 388 IPR002048 GO:0005509
Amo18g1003 594 Gene3D - 310 413 - -
Amo18g1003 594 SUPERFAMILY EF-hand 313 385 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1003 Amo-Chr18 16321149 16324017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1003 55 592 EF-hand Containing Proteins AT1G53210 56.261 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1003 - - qsu:112040079 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1003 18 16321149 16324017 Amo18g1705 18 34595129 34595416 ECH
Amo18g1003 18 16321149 16324017 Amo18g1003 18 16321149 16324017 ECH