Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0642 ATGGAATTGGGAAGCGTATTGCATTTCCTTGAGGACAAGACCATTCTAGTCACTGGTGCCACTGGCTTCCTTGCAAAAATTTTTGTGGAGAAGATACTAAGATGTCAATCAAATGTGAAAAAACTTTACCTTCTTTTGAGAGCTACCGATATTGAATCTGCTACTCATCGCTTGCACCATGAGATCGTAGAAAAGGAGTTGTTTAGATTGCTAAAGGAAAAGTTGGGTACAAAGTTCAATTCCTTTGTGTCAGAAAAGTTGAGTGTGGTACCAGGAGACATTTCTAAACAGGACTTGGATTTGAAGGACTCCATTCTAATGGATCATATTTGCAATCAAACTGATATTATAGTTAATATTGCTGCAACTACTAACTTTGATGAAAGATACGATGTTGCATTGGGTATTAACACATTCGGAGTTAAGCATGTATTGAACTTCGCTAAGAAATGTACTAAGCTCAAAGTGCTTCTTCACGTATCAACAGCATACGTGTGTGGCGAGAGAGGAGGAGTGGTAGTAGAGGATCCACAGGAAATGGGTGTGTCATTGAATGGAGTGGTAGGATTAGACATTGACATGGAAATGAAGTTGGTGCAACAAAAACTCAATCAGCTTCGAGAACAAGGAGCCTCTGAACATCACATTAAACTCGCCATGAAGGAATTAGGCATCCAAAGAGCAAATCTATATGGTTGGCCAAACACATATGTATTTACAAAGGCCATGGGTGAAATGCTTATACAAATTTCAAAGAAAAACATACCTATTGTTATTGTGCGTCCTACCATGATTGTTAGCACTTATAAAGAACCTTTTCCAGGTTGGATCGAAGGTGCAAGAACCATAGACAGTATGATTCTTGCTTACGGTAAAGGAAAATTATCCTGCTTCCTTGCAGATCTTAAGAAAGTTTTTGATGCGCTTTTTTGTTTTGCAAACAGATTTGATAATATGAACACAGAAAAGTTGTTGAGAGCGGCGAGAGAAGGTAGGGCAGAGATGGATTTGTTTTTCTTTGATCCAAAAATTATTGATTGGGAAGAATACTTTATGAAGATCCATTTCCCTGGCATTTCCAATGTTGAGGAGTATTTCAAAGAAAAGACCATTTTAATTACTGGTGCAACTGGATTCTTAGCCAAAATTCTCGTGGAGAAGATATTGAGGGTTCAACCCAACATAAAAAGGTTATACCTTGTTGTGAGAGCATCAAATCCACATATAGCTGTCCAACGCTTGCATAATGAGGTCTTTGAGAAGAAATTGTTCAAAATGCAAAAAGATAAGTGGGGTGAAAAATTCAGCTCTTTTTTAGCCGACAAAGTGGTGGCAGTTGCAGGTGATGTTTCTCTTCACAATTTCGGAATCAAAGACCAAATCCTCATTGAAGAGATGTTGGATGCGATTGATATTATAGTGCACACTGCGGGAACTACTACACTTGATGAAAGATTTGATGTTGCAATGGATATAAATACAATGGGAGCTTTTAACGCTATAAACTTTGCTAAAATGTCTTATGTTTGTGGAGGAGCAAATGGATTAATATCTGAGGAACCATTTCGCCTGGGCCAAACACTTAAAAGCTCATCAGAATTGGACATCAACTTAGAAAAGCAGGCAAATATGTATGGATGGCCAAACACGCATACATTTACAAAAGCCATGGGAGAAATGCTTGTGATGAACATGAAGCGAAATATACCATTGATCATCTCACGTCCTACTGCTGTCATCGGCACTCATTCAGAACCTTTTCCGGGTTGGATTGAAGGTGTTAGAACTATAGACTTTGTGTTCGTTGAGTATTTCAAAGGAGCAATAACTAGTTTTGTTGGTGATCCAAATAAAACTATGGACATGGTACCAGCAGACATGGTGATAAACTCAATGATCATAGCGCTGTTGGTTCATTCTAAGTGTAATCTTTCCAACAATTTCATCTGCTACCATATTGGTACTTCCCTAAGAAATCCAATTAAATTGTGGGATATTCAAGAAATAATGTATCTTTATATTACAAGCAATCCCTGGCTAAGAAATTATGAAAAGTCAGGGGCTTTATGTGAAAAACTATTATTCAACCCAAGAATTACTGAAGATCATGAATTTCACCAAACCAAGGCTTTGAAGAGGATAATGAATCTTTATAGGCCTTATGGTCTCGAGGGCATGTACGTACCCTATGCTACATATTCAATAAGGTGGAAATTCAAGTGCAGAATATATAACTTTGATCCTAAGAGCATTGATTGGAAGGACTACTTGATGAATGTTCATTTCCCAGTTCCTCTGCTTTGA 2304 0.378 MELGSVLHFLEDKTILVTGATGFLAKIFVEKILRCQSNVKKLYLLLRATDIESATHRLHHEIVEKELFRLLKEKLGTKFNSFVSEKLSVVPGDISKQDLDLKDSILMDHICNQTDIIVNIAATTNFDERYDVALGINTFGVKHVLNFAKKCTKLKVLLHVSTAYVCGERGGVVVEDPQEMGVSLNGVVGLDIDMEMKLVQQKLNQLREQGASEHHIKLAMKELGIQRANLYGWPNTYVFTKAMGEMLIQISKKNIPIVIVRPTMIVSTYKEPFPGWIEGARTIDSMILAYGKGKLSCFLADLKKVFDALFCFANRFDNMNTEKLLRAAREGRAEMDLFFFDPKIIDWEEYFMKIHFPGISNVEEYFKEKTILITGATGFLAKILVEKILRVQPNIKRLYLVVRASNPHIAVQRLHNEVFEKKLFKMQKDKWGEKFSSFLADKVVAVAGDVSLHNFGIKDQILIEEMLDAIDIIVHTAGTTTLDERFDVAMDINTMGAFNAINFAKMSYVCGGANGLISEEPFRLGQTLKSSSELDINLEKQANMYGWPNTHTFTKAMGEMLVMNMKRNIPLIISRPTAVIGTHSEPFPGWIEGVRTIDFVFVEYFKGAITSFVGDPNKTMDMVPADMVINSMIIALLVHSKCNLSNNFICYHIGTSLRNPIKLWDIQEIMYLYITSNPWLRNYEKSGALCEKLLFNPRITEDHEFHQTKALKRIMNLYRPYGLEGMYVPYATYSIRWKFKCRIYNFDPKSIDWKDYLMNVHFPVPLL* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0642 767 Gene3D - 8 315 - -
Amo18g0642 767 Gene3D - 361 711 - -
Amo18g0642 767 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 294 IPR036291 -
Amo18g0642 767 PANTHER FATTY ACYL-COA REDUCTASE 2 309 - -
Amo18g0642 767 PANTHER FATTY ACYL-COA REDUCTASE 312 361 - -
Amo18g0642 767 PANTHER FATTY ACYL-COA REDUCTASE 540 682 - -
Amo18g0642 767 CDD FAR-N_SDR_e 13 307 - -
Amo18g0642 767 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 309 IPR026055 GO:0080019
Amo18g0642 767 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 362 640 IPR036291 -
Amo18g0642 767 CDD FAR-N_SDR_e 369 678 - -
Amo18g0642 767 PANTHER FATTY ACYL-COA REDUCTASE 362 542 - -
Amo18g0642 767 Pfam Male sterility protein 373 632 IPR013120 -
Amo18g0642 767 Pfam Male sterility protein 17 308 IPR013120 -
Amo18g0642 767 PANTHER MALE STERILITY PROTEIN 2-RELATED 312 361 IPR026055 GO:0080019
Amo18g0642 767 PANTHER MALE STERILITY PROTEIN 2-RELATED 540 682 IPR026055 GO:0080019
Amo18g0642 767 PANTHER MALE STERILITY PROTEIN 2-RELATED 362 542 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0642 Amo-Chr18 8905393 8920030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0642 360 625 Acyl Lipid Metabolism Gene Families AT3G44540 43.366 6.80e-83 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0642 K13356 - gmx:100789566 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0642 18 8905393 8920030 Amo18g0642 18 8905393 8920030 ECH
Amo18g0642 18 8905393 8920030 Amo13g0170 13 2103986 2111306 PCT
Amo13g0170 13 2103986 2111306 Amo18g0642 18 8905393 8920030 PCT