Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0170 ATGGAGTTGGGAAGCATACTCCACTTCCTTGAGGATAAGACCATTCTCATCACTGGAGCCACTGGCTTCCTTGCCAAAATTCTGGTGGAGAAGATACTCAGGGTTCAACCAAATGTTAAGAAACTATTTCTTCTTTTAAGAGCTGCCGATGCTAAGTCTGCTACTCATCGCTTGCAAAATGAGATCATAGGCAAGGACTTGTTTAGATTGCTAAAAGAAAACTTAGGTCCAAACTTCAATTCCTTCATAGCACAAAAGTTGACACTCGTTCCAGGAGATATTTCTCGCCCGGATTTGGGTTTGGACTCTCATTCTATTCTCAAGCAACAAATTTACGACCAAACACATGTTATTATTAATTTAGCTGCAACTACCAACTTTGATGAAAGGTATGATATATCGTTGGGCCTAAATACCTTTGGGGTTAAGCACGTCATAAACTTTTCCAAAAAATGCACTAAACTCAAGGTGCTTGTACATGTATCAACAGCTTATGTGTGTGGTGAGGGAGAAGGTCTAATAATGGAGAAGCCATATGAGATGGGTGTTTCACTAAATGGAGTTGTTGGATTAGACATCGATGCCGAACACAAACTCATACGTCACAACTTAACTCACCTTCAACACCTGGGAGCCACAGAGAACGAAATTAAAGTTGCCATGAAGGACTTGGGTATTACCAGGGCAAAGAATTATGGATGGCCAAACACATATGTAATGACAAAAGCAATGGGAGAGATGATAGTAGAGGAGGAGAAAGGCAAAGGAGAGTTGGGTGTTGATATTGTCATTGTTCGTCCTTCCATAGTTACCAGCACCTTCAAGGACCCATTCCCCGGTTGGGCCGAGGGTGTTAGAACCATTGACAGTCTTGCTGTTGCTTATGGTAAAGGAAAACTCACTTGCTTCCTTGGAGATCTCAACGCCATTGTTGATGTCATACCAGCAGACATGGTGGTCAATGCAATACTAGTGGCCACGGCAGCTCATGCAACTCATCGTGCTAATGGTAATGGCATATATCATGTTACTTCCTCTGTTCGAAACCCACTTCGAAACTGGAATCTGCAAGACGTGGGGTACAGGTATTTCACGGCCAAACCATGGATCAACAAGGATGGTAAGGCAGTGAAGGTTGGGAAATGCAAAGTGCTGAGTAACATGGACAGCTTCAACAGACACATGTTCCTCCGCTACTTGCTTCTCTTAAAGGGACTGCAGCTGGCCAACACTGCCTTTTGCCACTTCTTCCAGGGGACCTATCTTGATCTCAACAGGAAGATTCAGATCGTCATGCGCTTGGTTGACCTTTACAAGCCTTACTTGTTCTTCAAGGGAGTTTTTGATGATATCAACACACACAACTTGAGACAAGCTCTGCTCATGGACACTCATCTCTTTTACTTCGATCCCAAGCTCATCCATTGGGATGATTACTTCCTCAACACTCATCTCCCTGGTGTCTTTCTATCTTGGTTTTTTCATCACGTCCCAATAATGGAAATAGGAAGCATAACTGAGTTCCTTAAGGATAAGAATGTTTTGGTCATTGGTGCCACGGGCTTCCTTGCAAAAATTTTTATAGAGAAGATACTGAGAGTCCAATCCAATGTGAAGAAACTTTATCTTCTTTTGAGAGCCAAAGATGCTGAATCTGCCACTCGCCGATTGCACAATGAGATTTTAGGGAAGGAATTGTTCAGATTATTGAAGGAAAATGTGGGTGCAAAGTTCAATTCCTTTGTCTCAGAAAAGTTGACTCTTGTTCCTGGAGATATCTCTTATGAAGACTTTAATTTGAAGGACTCCATTCTACGCCAAGAGCTTTACAATCAACTTGATGTTATACATGTATTAAGCTTTGCCAAAAACTGCACTAAACTCAAGGTGCTTGTCCATGTATCAACAGCATATGTATGTGGGGAGAGAGGAGGAGTGATAGTAGAGGATCCACACAAAATGGGAGTTTCACTAAATGGAGTGCAAGGACTCAACATTGTTGAGGAAAAGAAGATTGTGGAGAACAAGCTGAAGCAACTTCAACAGGATGGAGCCACAGAGGAAGAAATCAAAATCTCCATGAAGGACTTAGGCATGGAAAGAGCAAATGAATATGGATGGCCAAACACATATGTGTTTACAAAAGCAATGGGAGAAATGCTAGTTGAAACTTTAAAAGAAGATATGCCAGTGGTTATTCTACGTCCTACAATCGTTACTAGCACCTACAAAGAACCTTTTCCTGGTTGGGTGGAAGGCGTAAGGTAA 2268 0.4206 MELGSILHFLEDKTILITGATGFLAKILVEKILRVQPNVKKLFLLLRAADAKSATHRLQNEIIGKDLFRLLKENLGPNFNSFIAQKLTLVPGDISRPDLGLDSHSILKQQIYDQTHVIINLAATTNFDERYDISLGLNTFGVKHVINFSKKCTKLKVLVHVSTAYVCGEGEGLIMEKPYEMGVSLNGVVGLDIDAEHKLIRHNLTHLQHLGATENEIKVAMKDLGITRAKNYGWPNTYVMTKAMGEMIVEEEKGKGELGVDIVIVRPSIVTSTFKDPFPGWAEGVRTIDSLAVAYGKGKLTCFLGDLNAIVDVIPADMVVNAILVATAAHATHRANGNGIYHVTSSVRNPLRNWNLQDVGYRYFTAKPWINKDGKAVKVGKCKVLSNMDSFNRHMFLRYLLLLKGLQLANTAFCHFFQGTYLDLNRKIQIVMRLVDLYKPYLFFKGVFDDINTHNLRQALLMDTHLFYFDPKLIHWDDYFLNTHLPGVFLSWFFHHVPIMEIGSITEFLKDKNVLVIGATGFLAKIFIEKILRVQSNVKKLYLLLRAKDAESATRRLHNEILGKELFRLLKENVGAKFNSFVSEKLTLVPGDISYEDFNLKDSILRQELYNQLDVIHVLSFAKNCTKLKVLVHVSTAYVCGERGGVIVEDPHKMGVSLNGVQGLNIVEEKKIVENKLKQLQQDGATEEEIKISMKDLGMERANEYGWPNTYVFTKAMGEMLVETLKEDMPVVILRPTIVTSTYKEPFPGWVEGVR* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0170 755 CDD FAR_C 421 488 IPR033640 -
Amo13g0170 755 PANTHER FATTY ACYL-COA REDUCTASE 501 618 - -
Amo13g0170 755 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 346 IPR036291 -
Amo13g0170 755 Pfam Male sterility protein 615 754 IPR013120 -
Amo13g0170 755 Pfam Male sterility protein 17 323 IPR013120 -
Amo13g0170 755 PANTHER MALE STERILITY PROTEIN 2-RELATED 617 755 IPR026055 GO:0080019
Amo13g0170 755 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 489 IPR026055 GO:0080019
Amo13g0170 755 PANTHER MALE STERILITY PROTEIN 2-RELATED 501 618 IPR026055 GO:0080019
Amo13g0170 755 Pfam Male sterility protein 400 488 IPR033640 -
Amo13g0170 755 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 504 753 IPR036291 -
Amo13g0170 755 CDD FAR-N_SDR_e 13 368 - -
Amo13g0170 755 Gene3D - 8 399 - -
Amo13g0170 755 PANTHER FATTY ACYL-COA REDUCTASE 2 489 - -
Amo13g0170 755 PANTHER FATTY ACYL-COA REDUCTASE 617 755 - -
Amo13g0170 755 Gene3D - 506 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0170 Amo-Chr13 2103986 2111306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0170 611 755 Acyl Lipid Metabolism Gene Families AT4G33790 62.069 3.82e-58 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0170 K13356 - gmx:100798338 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0642 18 8905393 8920030 Amo13g0170 13 2103986 2111306 PCT
Amo13g0170 13 2103986 2111306 Amo18g0642 18 8905393 8920030 PCT