Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0579 ATGACCACCCTAACGCAGCCACCTTCTAATACTCTCAGTCTCAACTACCTCCTAAAACAGCGTTCCAAATGGGCCGGCCCGAACCGCGTTAAATGCGTTTATGCCTTCGAACCCACCAGCTTCGGAATCGGCTCCAACCGAGTTGACTGGCAGAGCTCCTGCGCCATTTTATCCAGCAAAGTCTTCTCGGAGGAAAAATCTTCTTCTTCCTCTAATTCCGCCGGAAACAACAACTCTGCTGCTGATAACATCGCCGCTGTTAACGGCCACAAAACAGCTGTTACGGACCTTAATCTCGTCCCGATTAACGGCAGCGGAGACAACGCCAAGTCGCTGCCTCCCAAGCCGCTAACGATTTCTGACCTCTCGCCGGCTCCGATGCACGGTTCGCAGCTTCGCGTGGCATACCAGGGCGTTCCTGGCGCATACTCCGAGGCCGCCGCTGGAAAAGCTTACCCTAAGTGTGAGGCCATACCTTGCGACCAGTTCGAGGTGGCGTTCCAGGCAGTGGAGCTCTGGATTGCCGACCGCGCTGTACTCCCAGTTGAAAACTCCCTTGGCGGATCGATCCACCGGAACTACGATCTCCTCCTCCGCCACCGCCTTCACATCGTTGGCGAGGTACAGCTCCCTGTCCACCACTGCCTCCTCGCTCTCCCCGGCGTACGAAAGGAGTACCTCAGCCGCGTAATCTCGCACCCTCAAGCTCTAGCTCAGTGTGAGCACACTCTCACAAAGCTCGGCCTCAACGTGGTTCGCGAGGCTGTCGACGACACCGCGGGTGCTGCAGAGTTCGTGGCAGTCAACTGCCTCCGCGACACGGCGGCAATTGCGAGCGCTCGCGCGGCAGAGCTGTATGGACTCCAAGTTTTAGCGGACGGGATCCAAGACGACCCGAGCAACGTAACCCGATTCGTGATGCTAGCACGAGAACCGATAATTCCTCGTACGGACAGGCCGTTCAAGACAAGCATTGTTTTTGCGCACGATAAGGGCACTTCGGTACTTTTCAAGGTGCTATCGGCGTTCGCCTTCAGAAACATAAGCTTGACGAAGATCGAGTCGCGGCCACACAGGAACCGTCCGATAAGGCTCGTGGATGATGCGAACGTTGGAACGGCGAAGCACTTTGAGTATCTATTCTACGTTGATTTTGAGGCGTCTATGGCGGATGTTAGGGCTCAGAATGCCTTGGCAGAGGTGCAGGAATTCACCTCTTTCTTGAGAGTCTTGGGTAGTTATCCTATGGACATGACTCCTTGGACACCCTCTTCGAGAGGAAATTAG 1287 0.5556 MTTLTQPPSNTLSLNYLLKQRSKWAGPNRVKCVYAFEPTSFGIGSNRVDWQSSCAILSSKVFSEEKSSSSSNSAGNNNSAADNIAAVNGHKTAVTDLNLVPINGSGDNAKSLPPKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPKCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLSRVISHPQALAQCEHTLTKLGLNVVREAVDDTAGAAEFVAVNCLRDTAAIASARAAELYGLQVLADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMADVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSSRGN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0579 428 ProSitePatterns Prephenate dehydratase signature 1. 286 308 IPR018528 GO:0004664|GO:0009094
Amo18g0579 428 ProSitePatterns Prephenate dehydratase signature 2. 350 357 IPR018528 GO:0004664|GO:0009094
Amo18g0579 428 CDD PBP2_Ct-PDT_like 133 312 - -
Amo18g0579 428 Gene3D - 128 216 - -
Amo18g0579 428 Gene3D - 217 298 - -
Amo18g0579 428 Pfam Prephenate dehydratase 134 312 IPR001086 GO:0004664|GO:0009094
Amo18g0579 428 Gene3D - 317 418 - -
Amo18g0579 428 PANTHER AROGENATE DEHYDRATASE 39 425 - -
Amo18g0579 428 SUPERFAMILY Periplasmic binding protein-like II 133 316 - -
Amo18g0579 428 ProSiteProfiles ACT domain profile. 324 415 IPR002912 -
Amo18g0579 428 CDD ACT_CM-PDT 322 415 - -
Amo18g0579 428 ProSiteProfiles Prephenate dehydratase domain profile. 133 310 IPR001086 GO:0004664|GO:0009094
Amo18g0579 428 SUPERFAMILY ACT-like 305 417 IPR045865 -
Amo18g0579 428 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 39 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0579 Amo-Chr18 7789594 7791254 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0579 K05359 - gmx:100797636 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0579 18 7789594 7791254 Amo13g0187 13 2239252 2241028 PCT
Amo13g0187 13 2239252 2241028 Amo18g0579 18 7789594 7791254 PCT