Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0187 ATGCACACTCTCTCACCGCCGTATTCTAACGCACTCAGCTACCTCCACCGGGGGAGTGAGCCCACATTTCGGGTAGTTCCAACCCGAATAACGGTTAAATGCGGTTACGGGTTCGAACCAGCAAGCTTCTCGCAGGGAGTCGGGTCAACCCGAACGGACTGGCAGAGCGCATGCGCCATCCTATCCAGCAAGGTCGACTCTCAGAACGAGGACTCAAACCCCACAGCGGCAGGAGAGAACATAGCCGCCGTGAACGGCCACAAATCCGCCGTAACAGACCTGAACCTAGTCCACGTCAGCGGCGAAAAAACGCTTCCTCCAAAGCCGCTCACGATCTCCGACCTATCGCCAGCACCGATGCACGGCTCGCAGCTGCGCGTGGCATACCAGGGAGTCCCCGGTGCGTACTCCGAGGCTGCCGCTGGCAAAGCCTACCCTAACGGAGAAGCCATACCTTGCGATCAGTTCGAGGTTGCTTTCCAAGCCGTTGAGCTCTGGATCGCCGATCGCGCCGTTTTACCCGTCGAAAACTCCCTCGGCGGCTCGATCCACCGGAACTACGACCTCCTCCTCCGCCATCGCCTCCACATCGTGGGCGAGGTCCAGCTCCCCGTTCACCACTGCCTCCTTGCCCTTCCTGGCGTCCGATCGGAGTACCTGACGCGCGTGATCTCTCACCCTCAGGCCCTCGCACAGTGCGAGCATACTCTCACCAAGCTCGGCCTCAACGTGGCTCGCGAAGCCGTAGACGACACCGCCGGCGCCGCGGAGTTCGTGGCCACCAACAACCTCCGAGACACGGCGGCAATCGCTAGCGCACGCGCGGCAGAGCTGTACGGTCTTCAGATCCTGGCGGATGGGATCCAAGATGACCCGAATAACGTGACCCGGTTCGTGATGTTGGCCCGAGAACCAATCATTCCTCGCACGGACCGGCCTTTTAAGACGAGTATCGTGTTCGCGCACGATAAAGGGACCTCCGTGCTCTTTAAGGTGCTCTCGGCGTTTGCGTTTAGGAACATCAGTTTGACTAAGATCGAGTCAAGGCCGCATCGTAACCGTCCGATCCGGATTGTTGACGATGACAAGAATGAAGGGACAGCAAAGCACTTTGAGTACATGTTTTATGTTGATTTCGAGGCATCCATGGCTGAGGTCAGAGCACAGAATGCCCTGGCTGAGGTTCAAGAATTCACCTCCTTTCTGAGGGTTTTGGGTAGTTATCCCATGGATATGACACCGTGGAGCCCTTCTGCTTCTCCTTCCTCTAGGGAGAGTAGAATTTAG 1287 0.5781 MHTLSPPYSNALSYLHRGSEPTFRVVPTRITVKCGYGFEPASFSQGVGSTRTDWQSACAILSSKVDSQNEDSNPTAAGENIAAVNGHKSAVTDLNLVHVSGEKTLPPKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNGEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRSEYLTRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVATNNLRDTAAIASARAAELYGLQILADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRIVDDDKNEGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSASPSSRESRI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0187 428 Gene3D - 310 412 - -
Amo13g0187 428 SUPERFAMILY Periplasmic binding protein-like II 126 309 - -
Amo13g0187 428 Gene3D - 121 209 - -
Amo13g0187 428 ProSitePatterns Prephenate dehydratase signature 2. 343 350 IPR018528 GO:0004664|GO:0009094
Amo13g0187 428 Pfam Prephenate dehydratase 127 305 IPR001086 GO:0004664|GO:0009094
Amo13g0187 428 Gene3D - 210 291 - -
Amo13g0187 428 ProSitePatterns Prephenate dehydratase signature 1. 279 301 IPR018528 GO:0004664|GO:0009094
Amo13g0187 428 CDD PBP2_Ct-PDT_like 126 305 - -
Amo13g0187 428 ProSiteProfiles Prephenate dehydratase domain profile. 126 303 IPR001086 GO:0004664|GO:0009094
Amo13g0187 428 CDD ACT_CM-PDT 315 409 - -
Amo13g0187 428 ProSiteProfiles ACT domain profile. 317 409 IPR002912 -
Amo13g0187 428 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 24 419 - -
Amo13g0187 428 PANTHER AROGENATE DEHYDRATASE 24 419 - -
Amo13g0187 428 SUPERFAMILY ACT-like 298 411 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0187 Amo-Chr13 2239252 2241028 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0187 K05359 - gmx:100809331 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0187 13 2239252 2241028 Amo13g0187 13 2239252 2241028 ECH
Amo18g0579 18 7789594 7791254 Amo13g0187 13 2239252 2241028 PCT
Amo13g0187 13 2239252 2241028 Amo18g0579 18 7789594 7791254 PCT