Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0525 AGGCCATCAACCCTGCATTTTAAGCAGAGTCACTCTGTTCCAACAATGCCATCATTGCTTTCCTCTTCTCTCCTTCAAATGCTTCCTCTTCTATTCTCTCTTATAATCTCACTCATGCTTTGTGGAATCATTGCTGATGAGTCTCCACCTTCACCTGGCTACTACCCTAGTTCCCAAGTTAGTTCTGTTGCCTTTGATCAAGCTTATAGAAACCTTTGGGGACCTCAGCACCAAAGACTAGACCAATCTGGCTCACTAACTATTTGGCTTGACTCTTACTCTGGAAGTGGATTCAAGTCAATCCGGCCGTATCGATCCGGATACTTTGGTGCTGCCATTAAGCTTCAATCTGGTTACACTGCAGGAGTGATTACATGTCTCTATCTTTCAAACAACCAAGACTACCCAGGAGACCATGATGAAGTGGACATTGAGTTCCTTGGTACCATCCCAGGTAAGCAATATGTGCTGCAGACAAATGTGTTCATGAGAGGAAGCGGAGACAAGAATAATGTGATAGGAAGAGAGATGAGGTTTCACCTTTGGTTCGATCCAACACAAGATTTTCACCACTATGCTATTCTATGGACACCCACTGACATCATATTTTTGGTGGACGATGTTCCAATAAGGAATTACCCAAGAAAGAATGATGCAACATTCCCTGAAAGAGCAATGTACGTGTACGGATCAATATGGGATGCATCATCATGGGCCACAGAGAATGGTAAATACAAAGCTGATTACAAATACCAACCATTCATTGGAAGATACAAAGATTTCAAGCTCCAAGGTTGCACCACTCAATCTTCCTCCTCATGCCAGCCACCCTCACCTTCACCACCTGGCTACAATTCACTAAGTCCTCAACAGTATAATGCAATGCAATGGGTCCAAAACAATTACTTGGTCTATGACTATTGCCGTGATCCCAATAGAGACCATACCCTTACTCCAGAATGCTAA 966 0.4327 RPSTLHFKQSHSVPTMPSLLSSSLLQMLPLLFSLIISLMLCGIIADESPPSPGYYPSSQVSSVAFDQAYRNLWGPQHQRLDQSGSLTIWLDSYSGSGFKSIRPYRSGYFGAAIKLQSGYTAGVITCLYLSNNQDYPGDHDEVDIEFLGTIPGKQYVLQTNVFMRGSGDKNNVIGREMRFHLWFDPTQDFHHYAILWTPTDIIFLVDDVPIRNYPRKNDATFPERAMYVYGSIWDASSWATENGKYKADYKYQPFIGRYKDFKLQGCTTQSSSSCQPPSPSPPGYNSLSPQQYNAMQWVQNNYLVYDYCRDPNRDHTLTPEC* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0525 321 PIRSF EndGlu_transf 26 321 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo18g0525 321 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 30 321 IPR044791 GO:0004553
Amo18g0525 321 Gene3D - 45 321 - -
Amo18g0525 321 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 30 321 - -
Amo18g0525 321 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 44 258 IPR000757 GO:0004553|GO:0005975
Amo18g0525 321 SUPERFAMILY Concanavalin A-like lectins/glucanases 64 321 IPR013320 -
Amo18g0525 321 ProSiteProfiles Kringle domain profile. 252 321 IPR000001 -
Amo18g0525 321 Pfam Glycosyl hydrolases family 16 66 250 IPR000757 GO:0004553|GO:0005975
Amo18g0525 321 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 285 321 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0525 Amo-Chr18 6971294 6972666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0525 28 321 Glycoside Hydrolase AT3G44990 67.119 3.91e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0525 K08235 - gmx:100796768 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0525 18 6971294 6972666 Amo13g0255 13 3602500 3603987 PCT
Amo13g0255 13 3602500 3603987 Amo18g0525 18 6971294 6972666 PCT