Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0255 ATGTTCACTACAATGCTGCCATCATCACCCCTTTCTTTCTTCTTCTTCTTCTTCCTTCTTGTACTCTCATTCATGATATGTGCTAGTGCTCAGGGTCCACCTTCACCTGGCTACTACCCTGGTTCCAAAATTAGTCCTATTAGCTTTGATCAAGGGTTCAGAAACCTATGGGGACCTCAGCATCAGAGGCTAGAACAAGGCACATTATCAATATGGCTAGATTCTAACTCGGGGAGTGGATTCAAGTCACTTCACTCTTATCAATCTGGATACTTTAGTGCTGCAATTAAGCTTCAACCCGGTTATACTGCAGGGGTCATTACAACTCTTTATCTTTCAAACAACCAAGATCACCCCGGAAATCACGACGAAATCGACATTGAGTTCCTAGGTACCACCCCTGATAAGCCATATGTTCTGCAGACAAATGTATACATAAGAGGAACTGGTGATGGCAACATTGTAGGGAGAGAGATGAGGTTTCATCTTTGGTTTGATCCAACACAAGATTTTCACATCTATGCTATTCTATGGAAACCAAGTGAGACAATGTAA 555 0.4216 MFTTMLPSSPLSFFFFFFLLVLSFMICASAQGPPSPGYYPGSKISPISFDQGFRNLWGPQHQRLEQGTLSIWLDSNSGSGFKSLHSYQSGYFSAAIKLQPGYTAGVITTLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGTGDGNIVGREMRFHLWFDPTQDFHIYAILWKPSETM* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0255 184 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 182 IPR013320 -
Amo13g0255 184 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 14 183 - -
Amo13g0255 184 Gene3D - 28 184 - -
Amo13g0255 184 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 14 183 IPR044791 GO:0004553
Amo13g0255 184 Pfam Glycosyl hydrolases family 16 50 182 IPR000757 GO:0004553|GO:0005975
Amo13g0255 184 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 28 184 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0255 Amo-Chr13 3602500 3603987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0255 6 184 Glycoside Hydrolase AT2G36870 66.480 1.32e-85 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0255 K08235 - gmx:100781528 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0255 13 3602500 3603987 Amo13g0255 13 3602500 3603987 ECH
Amo18g0525 18 6971294 6972666 Amo13g0255 13 3602500 3603987 PCT
Amo13g0255 13 3602500 3603987 Amo18g0525 18 6971294 6972666 PCT