Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0483 ATGCGGATCTTCGTTCTCCTCTCCCTCACCACTCTCCTCCTCTTCTCCACCTTCTCAATTACTTATTGCAAGGACTCCGCCACCGCCACCACCGCCGCCGCTGATGACGATGAAGATCTCAGTTTCCTCGAAGAGGCCGATGACACCTCTTCGTCTCATCATCACCAGTACGAAGGTCACTACCCGGATCCCGACCAAATCGACGACGCTGATCTCGATGACTTCTCTGGCTTCGACGAGACAGAGTTCAATCCTGACGCCTACAAAGAAGCCGAAGTGGACGAAAAGGACGTCGTCATTTTGAAGGATAAGAACTTCACCGACGTTGTCAAGAACAACCGCTACGTTATGGTTGAGTTCTACGCGCCTTGGTGCGGTCACTGCCAAGCCTTGGCTCCCGAGTACGCTGCCGCCGCCACTGAGCTGAAGGGCGAGAACGTCATTTTGGCGAAGGTGGATGCAACGGAGGAGAACGAATTAGCGCAGGAGTACGATATACAGGGTTTTCCCACCGTGTACTTCTTCATTGATGGAGTTCACAAGACTTACAATGGCCTCAGGAACAAAGATGCTATAGTGAGCTGGATTAAGAAGAAGATAGGACCTGGTATCTACAACATTACCACAGTGGAGGATGCTGAACGCATTTTGACCTCCGAAAGCAAAGTTGTTTTGGGATTCCTCAACTCTTTAGTCGATCCGGAGAGTGACGAGCTAGCTGCTGCATCAAGACTTGAGGATGAAGTCACCTTTTATCAAACTGTGAATCCTGATGTGGCAAAGCTTTTCCATATTGACCCGAGCATTAAGCGCCCAACTTTGATCCTGATCAAGAGAGAGGAGGAAAAACTGAACCATTTTGATGGTCAATTTGTGAAGTCTGAACTAGCAGACTTTGTGTTTGCCAATAAGCTTCCCTTGGTAACAACTTTTACAAGAGAAAGCGCACCATCAGTTTTTGAAAATCCAATCAAGAAACAGATATTGTTGTTTGCAACTTCAAACGATTCGGAGAAGTTCCTCCCGGTATTTCAAGATGCAGCAAAATTTTTCAAGGGGAAGCTAATCTTTGTGTATGTGCAAGTGGATAATGAAGATGTTGGAAAGCCGGTTTCAGATTACTTTGGTATATCTGGGGATGGTCCAAATGTACTTGCATACACTGGTAATGATGATGGAAGAAAATTTGTGCTTGATGGGGAGATGACTATTGACAAAATAAAGGCGTTTGGGGAAGATTTCCTTCAAGACAAGCTAAAACCTTTCTACAAGTCGGATCCAGTTCCAGAAAGTAATGATGGTGATGTGAAAATAGTTGTTGGGAATAACTTTGACGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTAGAGATTTATGCCCCCTGGTGTGGTCACTGCCAAGCACTGGAACCAATATACAACAAACTTGCAAAACATCTTCGCGGTATTGACTCACTTGTTATAGCCAAGATGGATGGAACAACAAATGAGCATCCTAGGGCAAAGTCTGATGGATTCCCCACACTACTCTTCTTCCCAGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACAGTGGTAGCTTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAGCCTCGGCCTCGACTTCTAAACCTGAGGGTACTGATGATACCAAGGAGAGTTCTGACGTCAAGGAAAGCAAGAGTAGCAGTAGCGACTTGAAGGATGAATTATAA 1758 0.4539 MRIFVLLSLTTLLLFSTFSITYCKDSATATTAAADDDEDLSFLEEADDTSSSHHHQYEGHYPDPDQIDDADLDDFSGFDETEFNPDAYKEAEVDEKDVVILKDKNFTDVVKNNRYVMVEFYAPWCGHCQALAPEYAAAATELKGENVILAKVDATEENELAQEYDIQGFPTVYFFIDGVHKTYNGLRNKDAIVSWIKKKIGPGIYNITTVEDAERILTSESKVVLGFLNSLVDPESDELAAASRLEDEVTFYQTVNPDVAKLFHIDPSIKRPTLILIKREEEKLNHFDGQFVKSELADFVFANKLPLVTTFTRESAPSVFENPIKKQILLFATSNDSEKFLPVFQDAAKFFKGKLIFVYVQVDNEDVGKPVSDYFGISGDGPNVLAYTGNDDGRKFVLDGEMTIDKIKAFGEDFLQDKLKPFYKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKHLRGIDSLVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPASASTSKPEGTDDTKESSDVKESKSSSSDLKDEL* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0483 585 Pfam Thioredoxin 98 198 IPR013766 -
Amo18g0483 585 Pfam Thioredoxin 436 521 IPR013766 -
Amo18g0483 585 ProSiteProfiles Thioredoxin domain profile. 413 543 IPR013766 -
Amo18g0483 585 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 563 - -
Amo18g0483 585 MobiDBLite consensus disorder prediction 549 585 - -
Amo18g0483 585 Gene3D Glutaredoxin 430 544 - -
Amo18g0483 585 CDD PDI_a_family 99 196 - -
Amo18g0483 585 Gene3D Glutaredoxin 305 429 - -
Amo18g0483 585 ProSiteProfiles Thioredoxin domain profile. 78 201 IPR013766 -
Amo18g0483 585 SUPERFAMILY Thioredoxin-like 205 315 IPR036249 -
Amo18g0483 585 MobiDBLite consensus disorder prediction 560 585 - -
Amo18g0483 585 ProSitePatterns Thioredoxin family active site. 117 135 IPR017937 -
Amo18g0483 585 TIGRFAM pdi_dom: protein disulfide-isomerase domain 101 199 IPR005788 GO:0003756
Amo18g0483 585 PANTHER PROTEIN DISULFIDE ISOMERASE 2 563 - -
Amo18g0483 585 CDD PDI_a_PDI_a'_C 436 538 - -
Amo18g0483 585 SUPERFAMILY Thioredoxin-like 93 201 IPR036249 -
Amo18g0483 585 PRINTS Thioredoxin family signature 116 124 - -
Amo18g0483 585 PRINTS Thioredoxin family signature 124 133 - -
Amo18g0483 585 PRINTS Thioredoxin family signature 165 176 - -
Amo18g0483 585 CDD PDI_b_family 204 303 - -
Amo18g0483 585 MobiDBLite consensus disorder prediction 46 66 - -
Amo18g0483 585 TIGRFAM ER_PDI_fam: protein disulfide isomerase 96 585 IPR005792 GO:0003756
Amo18g0483 585 Gene3D Glutaredoxin 202 304 - -
Amo18g0483 585 MobiDBLite consensus disorder prediction 45 66 - -
Amo18g0483 585 SUPERFAMILY Thioredoxin-like 431 543 IPR036249 -
Amo18g0483 585 CDD PDI_b'_family 325 415 - -
Amo18g0483 585 SUPERFAMILY Thioredoxin-like 303 433 IPR036249 -
Amo18g0483 585 Pfam Thioredoxin-like domain 239 410 - -
Amo18g0483 585 Gene3D Glutaredoxin 90 201 - -
Amo18g0483 585 ProSitePatterns Thioredoxin family active site. 456 474 IPR017937 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0483 Amo-Chr18 6269496 6273421 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0483 K09580 - gmx:100170706 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0483 18 6269496 6273421 Amo18g0483 18 6269496 6273421 ECH
Amo18g0483 18 6269496 6273421 Amo13g0317 13 4315490 4319154 ECH
Amo18g0483 18 6269496 6273421 Amo13g0317 13 4315490 4319154 PCT
Amo13g0317 13 4315490 4319154 Amo18g0483 18 6269496 6273421 PCT