Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g0317 | ATGCCGAGCCATAAACGACTCGTCGTTTTGCTCTCCCTCACTACTCTACTTCTCTTCTCCTCCTTCACCCTCACTTCAACGAAGAAATCCTCTCAAAACGACAATACCGCCAACGAAAACGACGACGAGGATCTCAGCTTCCTCGAGGAACCGGACGAAGCTGCCACCACCGCACACCACCGCGCCGACTCCAACTTACCAGATCCCGACGGCGACGACGAGGACCTCGAACTCGACGAAGACGACGACAACGATTACGGCGACTTCTCCTCTTACTCACCCTCGCACTTCGAGGCAGAACAACCGCCGTGGGATGTGGACGACAAAGACGTCGTCGTATTGAAGGAACGGAACTTCACGACCGTAATTGAGAACAACCAATACGTGATGGTGGAATTCTACGCGCCCTGGTGCGGGCACTGCCAAGCGTTGGCGCCGGAGTACGCCGCTGCCGCCACGGAGCTGAAGAACTACGGCGTCGTCCTGGCAAAGATTGACGCCACGGCGGAGCAAGAAATGGCGCACGAGTACGACGTTCAGGGCTTTCCCTCCATCTTCTTCTTCGTCGATGGAGAGCACAAGCCTTACACTGGCCACAGGACAAAGGATGGTATTGTGACTTGGGTTAAGAAGAAGATAGGGCCTGGGGTGTACAACATTAGTACGGCGGATGATGCGGAACGCATATTGACGTCTGAGAATAAAGTTGTCTTGGCCTTCCTCACCACTCTAGTTGGTTCTGAGAGTGAGGAGCTAGCTGCTGCATCCAAACTTGAGGATAATGTCAATTTTTATCAAACTGTGGTTCCTGATGTTGCAAAGCTTTTCCATAACGCCCTGCTTTGGTATGGCAAATTCGTAAAAGCGGAAATAGCAGACTTTGTAGCCATCAACAAGCTTGCCTTGGTTACAACTTTCTCAAAAGAAACTGCCCCATTAATCTTTGAAAGTAAAATCAAGAAACAGTTGTTGCTGTTTGTGACTAAGAAAAATTCAGATAAGTTCTTTCCAATTTTCGGAGAAGCAGCAAAACTTTTCAAGGGGAAGCTGGTCTTTGTTCATGTGGACATGGACGATGTTGATGCTGGAAAGCCTGTAGCAAGCTTCTTTGGCATCACAGGAAAAGGTCCCAAAGTACTTGCATATATTGGAAATAATGATGGGAGAAAATTTCTATATGATGGTGAGGTGACTGTTGACAATATTAAGGCATTTGGTGAAGATTTTCTTCATGACAAGTTAAAACCTTTCCTCAAGTCAGATCCAGTTCCAGAAACGAATGATGGTGACGTAAAAATTGTTGTCGGGGATAACTTCGATGACATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGCTTTATGCTCCTTGGTGTGGCCACTGCCAAGCACTGGAACCAACATACAATAAACTTGCAAAGCATCTACGTGGTATTGATTCTATTGTGATAGCCAAGATGGATGGTTCAACAAACGAGCATCCCAGGATAAAGACTGACGGATTCCCGACAATTCTCTTCTTCCCAGCAGGAAAAAAGAGTTCTGACCCTATTACTGTCGATGTGGACCGTACGGTGGCAGCATTTTATAAGTTCCTGAGGAAACATGCATCAATCCCATTCAAGCTCAAGAAACCAACCTCAACTTCTAAAGCAGGTTCTGGTCTCAAGGATGAACTATGA | 1683 | 0.4706 | MPSHKRLVVLLSLTTLLLFSSFTLTSTKKSSQNDNTANENDDEDLSFLEEPDEAATTAHHRADSNLPDPDGDDEDLELDEDDDNDYGDFSSYSPSHFEAEQPPWDVDDKDVVVLKERNFTTVIENNQYVMVEFYAPWCGHCQALAPEYAAAATELKNYGVVLAKIDATAEQEMAHEYDVQGFPSIFFFVDGEHKPYTGHRTKDGIVTWVKKKIGPGVYNISTADDAERILTSENKVVLAFLTTLVGSESEELAAASKLEDNVNFYQTVVPDVAKLFHNALLWYGKFVKAEIADFVAINKLALVTTFSKETAPLIFESKIKKQLLLFVTKKNSDKFFPIFGEAAKLFKGKLVFVHVDMDDVDAGKPVASFFGITGKGPKVLAYIGNNDGRKFLYDGEVTVDNIKAFGEDFLHDKLKPFLKSDPVPETNDGDVKIVVGDNFDDIVLDESKDVLLELYAPWCGHCQALEPTYNKLAKHLRGIDSIVIAKMDGSTNEHPRIKTDGFPTILFFPAGKKSSDPITVDVDRTVAAFYKFLRKHASIPFKLKKPTSTSKAGSGLKDEL* | 561 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g0317 | 560 | ProSiteProfiles | Thioredoxin domain profile. | 417 | 538 | IPR013766 | - | |
| Amo13g0317 | 560 | CDD | PDI_b'_family | 310 | 410 | - | - | |
| Amo13g0317 | 560 | MobiDBLite | consensus disorder prediction | 53 | 67 | - | - | |
| Amo13g0317 | 560 | Pfam | Thioredoxin | 111 | 211 | IPR013766 | - | |
| Amo13g0317 | 560 | Pfam | Thioredoxin | 431 | 516 | IPR013766 | - | |
| Amo13g0317 | 560 | Gene3D | Glutaredoxin | 214 | 299 | - | - | |
| Amo13g0317 | 560 | ProSitePatterns | Thioredoxin family active site. | 451 | 469 | IPR017937 | - | |
| Amo13g0317 | 560 | CDD | PDI_a_PDI_a'_C | 431 | 533 | - | - | |
| Amo13g0317 | 560 | PANTHER | PROTEIN DISULFIDE-ISOMERASE | 4 | 555 | - | - | |
| Amo13g0317 | 560 | MobiDBLite | consensus disorder prediction | 27 | 103 | - | - | |
| Amo13g0317 | 560 | TIGRFAM | pdi_dom: protein disulfide-isomerase domain | 115 | 212 | IPR005788 | GO:0003756 | |
| Amo13g0317 | 560 | CDD | PDI_a_family | 114 | 209 | - | - | |
| Amo13g0317 | 560 | ProSitePatterns | Thioredoxin family active site. | 130 | 148 | IPR017937 | - | |
| Amo13g0317 | 560 | Gene3D | Glutaredoxin | 425 | 539 | - | - | |
| Amo13g0317 | 560 | SUPERFAMILY | Thioredoxin-like | 297 | 428 | IPR036249 | - | |
| Amo13g0317 | 560 | Gene3D | Glutaredoxin | 101 | 213 | - | - | |
| Amo13g0317 | 560 | CDD | PDI_b_family | 217 | 277 | - | - | |
| Amo13g0317 | 560 | PANTHER | PROTEIN DISULFIDE ISOMERASE | 4 | 555 | - | - | |
| Amo13g0317 | 560 | MobiDBLite | consensus disorder prediction | 68 | 87 | - | - | |
| Amo13g0317 | 560 | TIGRFAM | ER_PDI_fam: protein disulfide isomerase | 109 | 560 | IPR005792 | GO:0003756 | |
| Amo13g0317 | 560 | SUPERFAMILY | Thioredoxin-like | 102 | 214 | IPR036249 | - | |
| Amo13g0317 | 560 | ProSiteProfiles | Thioredoxin domain profile. | 95 | 214 | IPR013766 | - | |
| Amo13g0317 | 560 | SUPERFAMILY | Thioredoxin-like | 218 | 310 | IPR036249 | - | |
| Amo13g0317 | 560 | PRINTS | Thioredoxin family signature | 137 | 146 | - | - | |
| Amo13g0317 | 560 | PRINTS | Thioredoxin family signature | 129 | 137 | - | - | |
| Amo13g0317 | 560 | PRINTS | Thioredoxin family signature | 178 | 189 | - | - | |
| Amo13g0317 | 560 | SUPERFAMILY | Thioredoxin-like | 427 | 538 | IPR036249 | - | |
| Amo13g0317 | 560 | Pfam | Thioredoxin-like domain | 253 | 405 | - | - | |
| Amo13g0317 | 560 | Gene3D | Glutaredoxin | 300 | 424 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g0317 | Amo-Chr13 | 4315490 | 4319154 | Dispersed/Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g0317 | K09580 | - | gmx:100785630 | 756.518 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo13g0317 | 13 | 4315490 | 4319154 | Amo13g0317 | 13 | 4315490 | 4319154 | ECH | |
| Amo18g0483 | 18 | 6269496 | 6273421 | Amo13g0317 | 13 | 4315490 | 4319154 | ECH | |
| Amo18g0483 | 18 | 6269496 | 6273421 | Amo13g0317 | 13 | 4315490 | 4319154 | PCT | |
| Amo13g0317 | 13 | 4315490 | 4319154 | Amo18g0483 | 18 | 6269496 | 6273421 | PCT |