Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0339 ATGAAGAACAGCAACGACGACGACAATAAGCAGCAAAACGAAGACTCTGCTGCCTCCGTAGATTCCCGATTCAACCAGACTCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAGCATTCCTGGTAAGATATTACTAAGCCAGAGGGTAGACCTGCCAGATACCCCAAATTCATATTCGCCGCCTTCTTATGAAAGGAGCTCACCATTAAGTGATACCGGCACAAGTGATCACACACCTGAGACACTAGAGGAGGAAGTTCGTAGTACAAGTAAACCAATTGCTTCTCCTAATGAGAATGTGTTAAAATTATCAACTTTACGCATAGAGAACCCGTCTGAAGAAGTGCGGAAATCTTCCGTGAGTGCTAGAGCTACGGATTCTGCAAGAGTGATGAAATTCAATAAGGTGCTCTCCGAGACAATGGTTATATTAGATAAGTTGCGTGAGTTAGCTTGGAGTGGTGTTCCAGATTACATGCGTCCTACAGTATGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGATGGGGTTTTGAGGAGGAAGCGCCTAGAGTATCTTGATTGTGTTTCGCAGTATTATGATATTCCTGAGACAGTTCGCTCAGATGATGAGATCAACATGCTCCGCCAGATTGCGGTAGATTGTCCTAGAACCGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTCCAGAAGTCACTCGAGCGTATTCTTTACACATGGGCTATTCGGCATCCTGCCAGTGGATATGTACAGGGGATAAATGATCTTGTTACACCATTTCTAGTCGTTTTCCTATCAGAACACTTGCAAGGGGGTATCGATAATTGGTCAATGTCTGATCTATCTGCAGAGAAAATTTCTAATATAGAGGCTGATTGCTATTGGTGCTTGTCAAAATTACTGGATGGTATGCAAGACCATTACACATTTGCTCAACCAGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCAAACCACATGGAGCTTCAGGGACTAGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGCCTGCTAATCCGCGAGATACCCTTCCATCTTGTCACACGCCTCTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGACAAGCTAAAGAAGCTTGATTTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCACAGCTGGTCTCACCAGGAGCTCGAGATGGTGCTTTCCCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGCCATTTAGCCACTTGA 1359 0.4444 MKNSNDDDNKQQNEDSAASVDSRFNQTLRNVQGLLKGRSIPGKILLSQRVDLPDTPNSYSPPSYERSSPLSDTGTSDHTPETLEEEVRSTSKPIASPNENVLKLSTLRIENPSEEVRKSSVSARATDSARVMKFNKVLSETMVILDKLRELAWSGVPDYMRPTVWRLLLGYAPPNSDRRDGVLRRKRLEYLDCVSQYYDIPETVRSDDEINMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEHLQGGIDNWSMSDLSAEKISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSNHMELQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLKKLDFQELVMFLQHLPTHSWSHQELEMVLSRAFMWHSMFNNSPSHLAT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0339 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 132 342 IPR035969 -
Amo18g0339 452 MobiDBLite consensus disorder prediction 47 99 - -
Amo18g0339 452 SMART tbc_4 152 408 IPR000195 -
Amo18g0339 452 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 192 316 - -
Amo18g0339 452 MobiDBLite consensus disorder prediction 51 77 - -
Amo18g0339 452 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 449 - -
Amo18g0339 452 MobiDBLite consensus disorder prediction 1 24 - -
Amo18g0339 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 440 IPR035969 -
Amo18g0339 452 ProSiteProfiles TBC/rab GAP domain profile. 155 382 IPR000195 -
Amo18g0339 452 Gene3D - 130 180 - -
Amo18g0339 452 Gene3D - 317 452 - -
Amo18g0339 452 Pfam Rab-GTPase-TBC domain 159 403 IPR000195 -
Amo18g0339 452 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 5 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0339 Amo-Chr18 4610298 4613740 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0339 K20360 - gmx:100785695 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0339 18 4610298 4613740 Amo18g0339 18 4610298 4613740 ECH
Amo18g0339 18 4610298 4613740 Amo13g0636 13 7924475 7928674 PCT
Amo13g0636 13 7924475 7928674 Amo18g0339 18 4610298 4613740 PCT