Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0636 ATGAGCAACCACCATAACCAACAAGATCAGCGTAACGGCATTCTCGATTCCACCTTCAATCAAACCCTTAGAACTGTTCAAGGGTTACTTAAAGGTCGTAGCATGCCTGGGAAAATATTATTGAGCCCGAGATCAGACCCAGTAGATGGCTCGAACACGAAGGACTCATCGCCAAGTTACAGGAGGAGCTTCTCACACAATGATGCTGGCACTAGTGACCATACATATGGGGCAGATGAGGAAGAAGTTCAGAGTCCAACTATTATTGCCAACTTGAATCGGTTATCAATCTCGCATGTAGAGAGATCATCCAAAGAATTCTGCAAGTCTACCATTGGTGCCAGATCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTTCTTTCAGGGACAACAGTTATATTAGACAAGTTGCGTGAGCTAGCCTGGAGTGGTGTTCCAGATGACATGCGCCCTACTGTGTGGAGGCTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGTGGTTCTACGAAGAAAGCGCCTCGAGTATCTTGAGTGTATTTCTCAGTATTATGATATTCCTGATACTGATCGTTCCGATGATGAGATCAACATGCGTCGCCAGATTGTTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTACCAGCAACAGCAAGTTCAGAAATCATTGGAGCGCATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTAGTTGTTTTCCTTTCAGAATACTTAGAAGGGTCTATAGATAATTGGTCAATGTCTGATTTATCCTCAGACCAGATCAACAATGTAGAGGCTGATTGCTATTGGTGCTTGTCGAAGTTGCTTGATGGTATGCAAGATCATTACACATTTGCTCAACCAGGGATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAACCTGTTTCACGACATGTGGAGGATCAAGGTCTTGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTCATCACACGCCTTTGGGACACGTACCTTGCTGAAGGAGATGCTTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTCCTTCTAACATGGTCAGACAATCTCCGGAAGCTAGATTTCCAAGAATTGGTGATATTCCTTCAACATCTTCCAACTCAGAACTGGACTCACCAAGAGCTGGAAATGGTACTTTCCAGGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCCAGCCATTTAGCCAGCTGA 1332 0.4362 MSNHHNQQDQRNGILDSTFNQTLRTVQGLLKGRSMPGKILLSPRSDPVDGSNTKDSSPSYRRSFSHNDAGTSDHTYGADEEEVQSPTIIANLNRLSISHVERSSKEFCKSTIGARSTDSARVMKFTKVLSGTTVILDKLRELAWSGVPDDMRPTVWRLLLGYAPPNSDRREVVLRRKRLEYLECISQYYDIPDTDRSDDEINMRRQIVVDCPRTVPDVPFYQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMSDLSSDQINNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHVEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDNLRKLDFQELVIFLQHLPTQNWTHQELEMVLSRAFMWHSMFNNSPSHLAS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0636 443 Gene3D - 123 174 - -
Amo13g0636 443 MobiDBLite consensus disorder prediction 34 82 - -
Amo13g0636 443 MobiDBLite consensus disorder prediction 46 72 - -
Amo13g0636 443 SMART tbc_4 143 399 IPR000195 -
Amo13g0636 443 Gene3D - 308 443 - -
Amo13g0636 443 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 182 307 - -
Amo13g0636 443 Pfam Rab-GTPase-TBC domain 149 390 IPR000195 -
Amo13g0636 443 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 5 440 - -
Amo13g0636 443 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 440 - -
Amo13g0636 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 309 431 IPR035969 -
Amo13g0636 443 ProSiteProfiles TBC/rab GAP domain profile. 146 373 IPR000195 -
Amo13g0636 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 124 333 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0636 Amo-Chr13 7924475 7928674 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0636 K20360 - gmx:100819281 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0339 18 4610298 4613740 Amo13g0636 13 7924475 7928674 PCT
Amo13g0636 13 7924475 7928674 Amo18g0339 18 4610298 4613740 PCT