Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0336 ATGAAAATGGGAAACAAGTTACCATTGATACTTGTGGCCATGGCACTTGTCATGATTGCGAGTGTTAGTGCTCAAAATTGTGGATGTGCATCGGACTTGTGTTGTAGCAAGTACGGATACTGTGGCACCGGCGACGATTATTGCGGCGACGGATGTCAACAGGGTCCTTGCTATAGCTCACCAAGCACTCCGAGCACTCCTAGCTCCGGCAGCGGTGGTGTTAACGTGGCCGACGTAGTCACACAAGATTTCTTCAATTCTATAATCAACCAAGCTTCTGCTAATTGTGAAGGCAAAAATTTCTACACTCGCGACGCTTTTCTTAGCGCTCTCAACTCCTACAGTACTTTTGGTCAGCTTAGCTCAACCGACGACTCTAAGCGCGAAATTGCAGCTGCCTTTGCTCATTTTACACACGAAACTGGCTATTTTTGCTATATTAATGAGCAAAATGGTGCATCACACAACTATTGTGACTCAAGCTACACACAATATCCATGCAACCCTAACAAGCAATACTTTGGTCGTGGACCTCTCCAACTAACATGGAACTACAACTACGGAGCGGCCGGAAACGCGAACAATTTCGACGGATTGAATGCGCCGGAGACGGTGGGGAATGATGCCGTGGTGTCATTCAAGGCGGCGTTGTGGTTTTGGATAAACAATGTAAGGTCAGTTGAGAGCCAGGGGTTTGGTGCAACCATTAGGGCCATTAATAGTGGTGAATGCAATGGTGGTAACACTTCGGAGATGAACGATCGTGTGAACCTATACAAACAATACTGTCAAGATTTCGGTGTTGCTCCTGGTGATAATCTTACTTGTTAA 831 0.4621 MKMGNKLPLILVAMALVMIASVSAQNCGCASDLCCSKYGYCGTGDDYCGDGCQQGPCYSSPSTPSTPSSGSGGVNVADVVTQDFFNSIINQASANCEGKNFYTRDAFLSALNSYSTFGQLSSTDDSKREIAAAFAHFTHETGYFCYINEQNGASHNYCDSSYTQYPCNPNKQYFGRGPLQLTWNYNYGAAGNANNFDGLNAPETVGNDAVVSFKAALWFWINNVRSVESQGFGATIRAINSGECNGGNTSEMNDRVNLYKQYCQDFGVAPGDNLTC* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0336 276 CDD ChtBD1 29 53 - -
Amo18g0336 276 ProSitePatterns Chitin recognition or binding domain signature. 29 48 IPR018371 GO:0008061
Amo18g0336 276 SUPERFAMILY Lysozyme-like 75 276 IPR023346 -
Amo18g0336 276 PANTHER ENDOCHITINASE EP3-LIKE 9 276 - -
Amo18g0336 276 Gene3D - 21 59 IPR036861 GO:0008061
Amo18g0336 276 Pfam Chitin recognition protein 24 57 IPR001002 GO:0008061
Amo18g0336 276 CDD chitinase_GH19 80 276 - -
Amo18g0336 276 Gene3D - 74 276 - -
Amo18g0336 276 ProSiteProfiles Chitin-binding type-1 domain profile. 24 59 IPR001002 GO:0008061
Amo18g0336 276 PRINTS Chitin-binding domain signature 35 42 IPR001002 GO:0008061
Amo18g0336 276 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Amo18g0336 276 PRINTS Chitin-binding domain signature 27 35 IPR001002 GO:0008061
Amo18g0336 276 Gene3D Endochitinase, domain 2 150 206 - -
Amo18g0336 276 PANTHER CHITINASE-RELATED 9 276 - -
Amo18g0336 276 ProSitePatterns Chitinases family 19 signature 1. 96 118 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo18g0336 276 ProSitePatterns Chitinases family 19 signature 2. 211 221 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo18g0336 276 Pfam Chitinase class I 230 276 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo18g0336 276 Pfam Chitinase class I 79 223 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo18g0336 276 PIRSF Endochitinase 1 276 IPR016283 GO:0004568|GO:0005975
Amo18g0336 276 SUPERFAMILY Plant lectins/antimicrobial peptides 22 63 IPR036861 GO:0008061
Amo18g0336 276 SMART ChitinBD_3 26 57 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0336 Amo-Chr18 4593935 4595231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0336 9 276 Glycoside Hydrolase AT3G54420 60.662 5.82e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0336 K01183 - pop:7467474 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0336 18 4593935 4595231 Amo18g0336 18 4593935 4595231 ECH
Amo18g0336 18 4593935 4595231 Amo13g0642 13 7968963 7971145 PCT
Amo13g0642 13 7968963 7971145 Amo18g0336 18 4593935 4595231 PCT