Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0642 ATGAGGATGGAGAAAAGGTTGTTGCTAAAGATGTGTGTTATGGGAATATGGGTAATGATGGGCATGGTGAAAAGTGATGGTTCTGTTGGTGACATAGTGACACAGGAATTCTTCAATGGTATTATTGATGAAGCTGATGATAGCTGTGCTGGGAAGAAGTTCTACTCCAGAGATGCATTCCTCAGTGCCCTCAATTCCTATGATCAGTTTGGTAATCTTGATACTCTTGATGACTCCAAGCGTGAGATTGCTGCTGCTTTTGCTCATTTCACCCACGAAACTGGACATTTTTGCTACATAGAAGAGATAGATGGTGCATCAAGGGACTATTGTGATGAAACAAACACAGAATATCCATGCAACCCAAACAAAGGGTATTATGGGCGTGGCCCAATTCAAATATCATGGAACTTCAACTATGGGCCTGCAGGGAAGAACATTGGGTTTGATGGGCTCAATGCACCTGAGACTGTGGCCAATGACCCTGTTGTGGCCTTCAAGACTGGACTTTGGTATTGGATGGAGAATGTGAGACCTGTGGTTAGCCAAGGCTTTGGTGCAACCATTAGAGCCATCAATGGTCAACTTGAGTGTGATGGTGCTAACCCTACCACTGTTCAGGCTAGGGTTAATTATTACAAACAATATTGTTCACAATTAGGTGTTGACCCTGGTGATAATCTTACTTGCTAG 693 0.4329 MRMEKRLLLKMCVMGIWVMMGMVKSDGSVGDIVTQEFFNGIIDEADDSCAGKKFYSRDAFLSALNSYDQFGNLDTLDDSKREIAAAFAHFTHETGHFCYIEEIDGASRDYCDETNTEYPCNPNKGYYGRGPIQISWNFNYGPAGKNIGFDGLNAPETVANDPVVAFKTGLWYWMENVRPVVSQGFGATIRAINGQLECDGANPTTVQARVNYYKQYCSQLGVDPGDNLTC* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0642 230 PANTHER ENDOCHITINASE EP3-LIKE 18 230 - -
Amo13g0642 230 SUPERFAMILY Lysozyme-like 28 230 IPR023346 -
Amo13g0642 230 CDD chitinase_GH19 33 230 - -
Amo13g0642 230 ProSitePatterns Chitinases family 19 signature 2. 164 174 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo13g0642 230 Gene3D - 28 230 - -
Amo13g0642 230 Pfam Chitinase class I 183 230 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo13g0642 230 Pfam Chitinase class I 32 179 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo13g0642 230 PANTHER CHITINASE-RELATED 18 230 - -
Amo13g0642 230 ProSitePatterns Chitinases family 19 signature 1. 49 71 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo13g0642 230 Gene3D Endochitinase, domain 2 101 158 - -
Amo13g0642 230 PIRSF Endochitinase 5 230 IPR016283 GO:0004568|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0642 Amo-Chr13 7968963 7971145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0642 28 230 Glycoside Hydrolase AT3G54420 77.833 1.10e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0642 K01183 - gmx:100527091 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0336 18 4593935 4595231 Amo13g0642 13 7968963 7971145 PCT
Amo13g0642 13 7968963 7971145 Amo18g0336 18 4593935 4595231 PCT