Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0274 ATGGCGAAGAGTGAGATTCGTTTTTCTACTCAGCTTATTGATGGAGATGGCACATTCAATGTTGAGGGAATTGAGAAGTTCATGAAGGACGTTAAGTTAGCTGAATGCGGGCTTTCCTATGCCGTAGTTTCCATCATGGGTCCACAAAGTAGTGGCAAGAGTACACTATTAAATAATTTGTTTGGCACTGATTTTAGAGAGATGGATGCATTTAAGGGAAGATCTCAAACAACCAAAGGAATTTGGTTGGCAAAATGTGCCGGCATAGAGCCTTGTACACTTGTGATGGACTTAGAGGGCACAGATGGAAGAGAAAGGGGAGAGGACGATACTGCATTTGAAAAGCAGAGTTCTCTTTTTGCTTTGGCTGTTTCGGATATTGTGCTGATAAACATGTGGTGTCATGACATCGGCCGTGAGCAAGCTGCAAACAAGCCACTCCTAAAAACTGTGTTTCAGGTCATGATGAGGTTGTTTAGTCCACGCAAAACAACATTGATGTTTGTCATACGTGATAAAACAAGGACACCACTAGAAAATTTAGAACCTGTCTTACGAGAAGATATTCAGAAGATTTGGGATTCTGTTCCTAAGCCACAGGCCCACAAGGAAACCCCACTGAGTGAATTTTTTAATGTTGAAGTTGTTGCTCTTTCTAGCTTCGAAGAGAAGGAAGAGCAATTTAAGGAGCAGGTTCATGAGTTGAGGCAGCGATTTGTTCATTCCATAAATCCTGGTGGGCTTGCGGGGGATCGGCGTGGAGTTGTTCCTGCTTCGGGCTTTTCTTTTAGTGCTCAGCAAATCTGGAAAGTCATCAAGGAGAACAAAGATCTTGACCTTCCCGCACACAAGGTCATGGTAGCTACTGTAAGATGTGAAGAAATTGCCAATGAGAAATATGCCCTTTTTGCTGCCAATGAGGACTGGCGTCAGCTAGAAGAGGCTGTGCAATCAGGTCCAGTTGCTGGATTTGGGAAAAAGCTCAATTCGCTTCTTGATACTTGTCTTTCAGAGTATGATGTTGAAGCCACTTATTTTGATGAAGGTGTGAGAACCGCTAAACAGAAGCACCTTCAAGAAAAACTGCTGCAACTTGTCCAACCAGCATTCCACTCTGCCCTTGGACATATAAGGATTGGAACTTTCGATAAGTTCAAGGAAGCATTTGATAAGGCTTTGAATAAAGGGGAAGGGTTTTCTGAAGCTGCTAATAATTGCACAGGGATTTTTATGGCTCAGTTTGATGAAGCCTGTGCAGATGTTGTTATCGAAGTTGCAGACTGGGATACATCTAAAGTAAGGGAGAAACTACGACGTGACATTGATGCACATGTTGCATCTGTACGTGCAGCTAAGTTATCGGAACTTACTACAACATATGAGGAAAAACTAAAAGAAGCTTTGTCTGGACCTATTGAAGCACTTTTTGATGGAGCTAATAATGAAACTTGGCCATCAATAAGGAAACTCTATAAGCGTGAGACTGAATCAGCTGTTTCTGGGTTTTCTGCTGCGCTTACCAGGTTTGATGCAGATGAAGAAACACAAAAGAACATGATTGTGAGTTTAGAGAATTATGCAAGAGGTTTGATAGAGACAAAAGCTAGGGATGAAGCTTGCAGAGTCCTAATACGTATGAAGGAAAAGTTCACAACATTGTTTAGTCATGATGCTGAATCAATGCCGCGTATTTGGACAGGAAGCGAAGATATTCGATCCATCACCAAGACTGCTCGATATGCTTGCCTGAAGTTGCTATCTGTTATGACCGTAATTCGTTTGGATGATAAAGATGACACTCTTAACATTGAGAATATTTTAGCAAAAGCATTGCTAGATTCACCCAATGAAAAAGAGAAGAAAATCACAACAGTTGATCCACTGGCTTCAAGCACTTGGGAAAAGGTTCCAGCTTCTAAAACATTGATCACCCCTGTCCAGTGTAAATCTTTGTGGAGGCAATTCAAGATTGAGACAGAATATACTGAGGCCAACAAGCGTGGTAACAACTGGTTACCTCCACCATGGGCAATTGTTGCCTTGCTTATTCTGGGATTTAACGAGTTTATGACACTTCTAAGAAATCCTTTATACTTGATTCTCATTTTTATTGGTTATCTTCTCATTAAAGCCTTGTGGGTGCAACTTGACGTTGCGGGTGATTTTCGCCATGGTGCACTAGCTGGACTCTTATCCTTGTCTACCAAGTTTCTTCCAACTATAATGAATCTTATGAGAAAGTTAGCAGAGGAGGGGGTTCCTGAAACTAACAATCCTCAGCCAACTCCATCAACAAGTAATCAAACTACTGGTAGCTCTGTGTCATCTACTGCTTCATCTAAGCATTACCCAAGCTTGGTGGCAGAGTGGAGGCCATCATAA 2382 0.4181 MAKSEIRFSTQLIDGDGTFNVEGIEKFMKDVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFGTDFREMDAFKGRSQTTKGIWLAKCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSSLFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSFEEKEEQFKEQVHELRQRFVHSINPGGLAGDRRGVVPASGFSFSAQQIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYALFAANEDWRQLEEAVQSGPVAGFGKKLNSLLDTCLSEYDVEATYFDEGVRTAKQKHLQEKLLQLVQPAFHSALGHIRIGTFDKFKEAFDKALNKGEGFSEAANNCTGIFMAQFDEACADVVIEVADWDTSKVREKLRRDIDAHVASVRAAKLSELTTTYEEKLKEALSGPIEALFDGANNETWPSIRKLYKRETESAVSGFSAALTRFDADEETQKNMIVSLENYARGLIETKARDEACRVLIRMKEKFTTLFSHDAESMPRIWTGSEDIRSITKTARYACLKLLSVMTVIRLDDKDDTLNIENILAKALLDSPNEKEKKITTVDPLASSTWEKVPASKTLITPVQCKSLWRQFKIETEYTEANKRGNNWLPPPWAIVALLILGFNEFMTLLRNPLYLILIFIGYLLIKALWVQLDVAGDFRHGALAGLLSLSTKFLPTIMNLMRKLAEEGVPETNNPQPTPSTSNQTTGSSVSSTASSKHYPSLVAEWRPS* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0274 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 277 IPR027417 -
Amo18g0274 793 Gene3D - 11 246 IPR027417 -
Amo18g0274 793 Hamap Protein SEY1 [SEY1]. 9 753 IPR008803 -
Amo18g0274 793 Coils Coil 218 238 - -
Amo18g0274 793 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Amo18g0274 793 MobiDBLite consensus disorder prediction 751 793 - -
Amo18g0274 793 CDD GBP 36 242 - -
Amo18g0274 793 PANTHER PROTEIN SEY1 3 781 IPR008803 -
Amo18g0274 793 Pfam Sey1 three-helix bundle domain 323 751 IPR046758 -
Amo18g0274 793 MobiDBLite consensus disorder prediction 755 783 - -
Amo18g0274 793 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Amo18g0274 793 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 3 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0274 Amo-Chr18 3782719 3789556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0274 K22698 - gmx:100777656 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0274 18 3782719 3789556 Amo09g0189 09 1982286 1988420 hybridization
Amo18g0274 18 3782719 3789556 Amo09g0189 09 1982286 1988420 PCT
Amo09g0189 09 1982286 1988420 Amo18g0274 18 3782719 3789556 PCT