Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0189 ATGGCTAATAATCATTGCTGTTCAACTCAACTTATTGATGGAGATGGTACATTCAATGTAGCTGGGATTGAAACTTTCATGAAGGAGGTGAAATTTAGTGAATGTGGGCTTTCGTACGCTGTAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTGTTAAACAATTTGTTTCGTACCAATTTCCGTGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTTCTGGGATAGAGCCTTGTACCATTGTGATGGATTTGGAAGGAACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTCTTGCTGTCTCAGATATAGTGTTAATCAACATGTGGTGTCATGACATTGGCCGTGAGCAAGCTGCTAATAAGCCACTCTTGAAAACTGTCTTTCAGGTTATGATGAGATTGTTTAGCCCACGCAAAACGACATTGTTGTTTGTCATACGTGACAAAACGCGGACACCACTTGAAAATTTAGAACCTGTCTTGCGAGAAGATATTCAGAAGATATGGGACTCGGTTCCTAAACCACAAGCCCACAAGGAAACCCCACTTAGTGAATTTTTTAATGTTGAAGTTACTGCTCTTTCTAGTTATGAAGAAAAAGAAGAGCAATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCCAGCACTCCATCGCTCCTGGTGGGCTTGCAGGGGACAGGCGAGGAGTAGTTCCTGCATCGGGCTTTTCTTTTAGTGCTCAGCAAATCTGGAAAGTCATCAAAGAGAACAAGGACCTTGACCTTCCTGCACATAAGGTAATGGTTGCCACTGTCCGATGTGAAGAAATTGCCAACGAGAAATATGCAACTTTTTCTGCAAATGAGGAATGGTGCCAATTAGAAGAAGCCGTACAATCAGGCCCTGTTCAGGGGTTTGGAAAAAAACTCAATTCACTCCTAGGTGCTTGTTTGTCAGAGTATGATCTTGAAGCCACTTATTTTGATGAAGGTGTGAGATCTGCAAAACAAAAACAACTCCAAGAAAAATTGTTGCAACTTGTCCAACCATCGTTCCTTTCTGCGCTGGGACATATAAGATCTGGAATAGTGGATAAATTCAAGGATGTATTTGACAAGGCTTTGAATAGAGGTGAAGGGTTTTCTTTGGCTGCCAAAAACTGCATTGAGTCTTCTATGGCTCAATTTGACGAAGCTTGTGCAGATGTTGTAATTGAACTAGCAGACTGGGATACATCTAAAGTAAGGGAGAAACTGCGGCGTGACATTGATGCACATGTGGCATCTGTACGTGATGCTAAGCTTTCTGAACTGACTTCATCGTATGAGGAAAAACTTAAAGAAGCCTTGTCTGGACCTGTTGAAGCTCTTTTGGATGAAGCAAGTGGTGATACTTGGTCATCGATAAAGAAACTTCTTAGGCGTGAGACTGAATCAGCTGTCTCAGGGTTCTCTGCTGCGCTTGCTGGGTTTGATATGGATGAAGATACGAGACAGAAAATGATTTCGAATATAGCAGATTATGCTAGGGGTGTAGTAGAAGGAAAGGCTAGGGATGAAGCTGGAAGAGTTCTAATCCGGATGAAGGATAGGTAA 1647 0.4232 MANNHCCSTQLIDGDGTFNVAGIETFMKEVKFSECGLSYAVVSIMGPQSSGKSTLLNNLFRTNFREMDAFKGRSQTTKGIWMARCSGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVTALSSYEEKEEQFKEQVANLRQRFQHSIAPGGLAGDRRGVVPASGFSFSAQQIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYATFSANEEWCQLEEAVQSGPVQGFGKKLNSLLGACLSEYDLEATYFDEGVRSAKQKQLQEKLLQLVQPSFLSALGHIRSGIVDKFKDVFDKALNRGEGFSLAAKNCIESSMAQFDEACADVVIELADWDTSKVREKLRRDIDAHVASVRDAKLSELTSSYEEKLKEALSGPVEALLDEASGDTWSSIKKLLRRETESAVSGFSAALAGFDMDEDTRQKMISNIADYARGVVEGKARDEAGRVLIRMKDR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0189 548 CDD GBP 35 241 - -
Amo09g0189 548 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 45 280 - -
Amo09g0189 548 Pfam Sey1 three-helix bundle domain 322 548 IPR046758 -
Amo09g0189 548 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 6 548 - -
Amo09g0189 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 276 IPR027417 -
Amo09g0189 548 Coils Coil 217 237 - -
Amo09g0189 548 Gene3D - 17 244 IPR027417 -
Amo09g0189 548 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 36 251 IPR030386 GO:0005525
Amo09g0189 548 PANTHER PROTEIN SEY1 6 548 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0189 Amo-Chr9 1982286 1988420 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0189 K22698 - gmx:100777656 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0274 18 3782719 3789556 Amo09g0189 09 1982286 1988420 hybridization
Amo18g0274 18 3782719 3789556 Amo09g0189 09 1982286 1988420 PCT
Amo09g0189 09 1982286 1988420 Amo09g0189 09 1982286 1988420 PCT
Amo09g0189 09 1982286 1988420 Amo18g0274 18 3782719 3789556 PCT