Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0258 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGAACCCTCTGGAGTGGAAATTCTCGCAGGTTTTCGGCGAACGCACGGCCGGTGAAGAGGTTCAGGAAGTTGACATAATTTCTGCTATTGAATTTGACAAATCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTTGTTCTATTTGAGAGGACAGATACAAAAGATGCTGGTGGATCAAGAAGGGATCGGGAGAGGATGGACTATTCTATTAGTAGGCATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAGCCCGAGTTTGACTATCTCAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCCTCTTCCTTCTTTCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAAATCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAAGCAATGGGAAATGGCAGTATTGGTAGTTCAAGTAGTTCTAGGGCATATCTTGCAAATGGAGGAGCTCCAGATAGATCACACAATAACCTAAGCAATGACTACTCATTTCCACCAGGAGGCATTCCATCACTAAAGTTACCTGTGGTAAGTAGCCAGGAGACGAGTTTATTGGCTCGGTGTCGCAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCAGCCGATGATTTGCGTATAAATCTTTGGAATCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTAATAACATCAGCAGAATTCCACCCTACACATTGTAATACGTTGGCATACAGCAGTTCAAAGGGTTCAATCCGCCTAGTTGACTTGCGGCAATCAGCATTATGTGATTCGCATACCAAATTGTTTGAGGAACAGGAGGCCCCTGGGTCCAGATCATTTTTCACCGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGCCGTGATTATATGACTCTAAAGCTATGGGACATAAATATGGATTCAGGCCCGGTTGCAACTTTCCAGGTTCACGAGTATTTAAGACCTAAGCTTTGTGATCTATATGAAAATGATTCAATTTTTGACAAGTTCGAGTGTTGTCTGAGCGGTGACGGGTTGCGTATTGCTACTGGCTCTTACAGCAACTTATTCCGTGTGTTCGGTTGTGCCCTGGGAAGTGCCGAGGCTACAACCTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCACTACACCGAGGCAAAGATCCCTCGGAAACAGTATAACAAGAGTTGTAAGACGAGGTACAGAAGCCCCAGGCGTTGACGCGAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTGGCATGGCATCCAACTGAGAATTCAATCGCCTGCGCGGCCGCAAATAGCTTGTATATGTACTATGCGTAA 1539 0.4308 MNGGDEVVAAPAGPPNPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDAGGSRRDRERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISEMNVDPSKAMGNGSIGSSSSSRAYLANGGAPDRSHNNLSNDYSFPPGGIPSLKLPVVSSQETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHTKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRIATGSYSNLFRVFGCALGSAEATTLEASKNPMRRQVPTTTPRQRSLGNSITRVVRRGTEAPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0258 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 229 243 IPR018067 -
Amo18g0258 512 Gene3D - 75 510 IPR015943 GO:0005515
Amo18g0258 512 PIRSF PPA2_B55 11 512 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Amo18g0258 512 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 512 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 MobiDBLite consensus disorder prediction 160 186 - -
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 231 258 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 259 286 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 287 315 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 316 343 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 344 371 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 372 397 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 398 424 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 481 510 IPR000009 GO:0000159|GO:0019888
Amo18g0258 512 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 512 - -
Amo18g0258 512 SUPERFAMILY WD40 repeat-like 39 504 IPR036322 GO:0005515
Amo18g0258 512 SMART WD40_4 105 145 IPR001680 GO:0005515
Amo18g0258 512 SMART WD40_4 220 259 IPR001680 GO:0005515
Amo18g0258 512 SMART WD40_4 329 367 IPR001680 GO:0005515
Amo18g0258 512 SMART WD40_4 31 66 IPR001680 GO:0005515
Amo18g0258 512 SMART WD40_4 270 310 IPR001680 GO:0005515
Amo18g0258 512 SMART WD40_4 371 425 IPR001680 GO:0005515
Amo18g0258 512 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Amo18g0258 512 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0258 Amo-Chr18 3632251 3639594 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0258 K04354 - gmx:100799449 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0258 18 3632251 3639594 Amo18g0258 18 3632251 3639594 ECH
Amo18g0258 18 3632251 3639594 Amo09g0241 09 2769539 2776610 hybridization
Amo18g0258 18 3632251 3639594 Amo09g0241 09 2769539 2776610 PCT
Amo09g0241 09 2769539 2776610 Amo18g0258 18 3632251 3639594 PCT