Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0241 ATGAACGGTGGTGATGATAAGGTTGCAGCTCCGGCGGGTCCACCGCAACCGCTGGAGTGGAAATTCTCGCAGGTGTTCGGCGAACGTGCGGCCGGTGAAGAAGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCCGGTGATCATCTAGCTACTGGTGATCATGGTGTACCACGAAGGGATTTGGAGAGGATGGACAATTCTCTTACTAGGCATCCTGAGTTTCGTTATAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATCAACAAAATCAAATGGTGCCAAACAGCTAATGGTGCTCTGTTCCTTCTATCTACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGATCAAGAAAATTTCTGACATGAATGTTGACCATTTGAAAGCAGTGGGAAATGTCTCTAGTTCAAGTAATTCCAGTAGCTCCATTCCTTACCTTGCAAATGGAGGCTTATCAATTCCACCAGGAGGCATACCTTCACTAAAATTACCTGTGGTAACCAGCAATGAGACCAGTCTGATGGCTCGATGTCGTAGAGTGTATGCCCATGCGCATGATTATCACATCAATTCTATTTCAAATAACAGTGACGGTGAAACTTTCATATCGGCTGATGATTTGCGAATAAACCTTTGGAACCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGGAGTCTCTGGAAGGAACAAAGATGAGGTTATAACGTCGGCAGAATTTCACCCCACTCATTGCAACACACTGGCATATAGTAGTTCAAAAGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCGCTCTGTGATTCTCACACCAAAATATTTGAGGAGCACGAGGCCCCTGGCTCCAGATCATTTTTCACAGAGATTATAGCTTCTATCTCAGACATAAAATTTGCAAAGGATGGAAGATATATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATCAACATGGATTCTGGTCCAGTTGCTACATTCCAGGTTCATGAGTATTTAAGACCAAAGCTTTGTGATTTATATGAAAACGATTCAATTTTTGACAAGTTTGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTTTCAACGGGTTCCTACAGTAATTTATTCCGTGTGTTTGGTTGTGCCCCCGGTAGTGCTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGGCAAGTTCCAACCCCTTCAAGGCCTTCCAGATCACTGGGAACTAGTATAACACGAGTTGTAAGACGCGGAGCTGATGGAGTTGATGCAAATGGCAATTCTTTTGATTTCACAACAAAGTTGCTACACTTAGCGTGGCACCCAACTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCTTAA 1479 0.4199 MNGGDDKVAAPAGPPQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDHGVPRRDLERMDNSLTRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKIKKISDMNVDHLKAVGNVSSSSNSSSSIPYLANGGLSIPPGGIPSLKLPVVTSNETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTGVSGRNKDEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHTKIFEEHEAPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGTSITRVVRRGADGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 269 297 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 461 490 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 77 105 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 326 353 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 380 406 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 298 325 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 354 379 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 106 134 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 492 - -
Amo09g0241 492 SMART WD40_4 299 349 IPR001680 GO:0005515
Amo09g0241 492 SMART WD40_4 194 233 IPR001680 GO:0005515
Amo09g0241 492 SMART WD40_4 90 130 IPR001680 GO:0005515
Amo09g0241 492 SMART WD40_4 247 292 IPR001680 GO:0005515
Amo09g0241 492 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 492 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 PIRSF PPA2_B55 11 492 IPR000009 GO:0000159|GO:0019888
Amo09g0241 492 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 203 217 IPR018067 -
Amo09g0241 492 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 90 104 IPR018067 -
Amo09g0241 492 Gene3D - 47 490 IPR015943 GO:0005515
Amo09g0241 492 SUPERFAMILY WD40 repeat-like 39 484 IPR036322 GO:0005515
Amo09g0241 492 Pfam WD domain, G-beta repeat 197 233 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0241 Amo-Chr9 2769539 2776610 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0241 K04354 - gmx:100799449 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0258 18 3632251 3639594 Amo09g0241 09 2769539 2776610 hybridization
Amo18g0258 18 3632251 3639594 Amo09g0241 09 2769539 2776610 PCT
Amo09g0241 09 2769539 2776610 Amo09g0241 09 2769539 2776610 PCT
Amo09g0241 09 2769539 2776610 Amo18g0258 18 3632251 3639594 PCT