Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0204 ATGAGTGTCACCGGGAAGAAAATGACCAAACAGTTAACAGGGAAAAGGGATGATACCCATTTGCATTCTGCAGCAAGATCAGGGAGTCTCTCTGTACTAAGGGAGACCCTTACTGGTATAGAAGATCAGGAGGAACTCCATGAGCTATTGGCAAGGCAGAACCAAGATGGTGAAACACCTCTTTATGTTGCTGCTGAATATGGTTATGTTGATCTGGTTAGGGAGTTGATTCAACTTTATGATCTTGCTGATGCTGGAATCAAAGCTAGGAATGGTTTTGATGCATTGCATATTGCTGCCAAACAAGGGGATTTAGATATAGTGAAGATCCTTATGGAAGCTCATCCTGAGTTATCAATGACTGTGGATCAATCTAACACCACAGCATTGCACACGGCGGCGACACAAGGGTACGTTGAGATAGTGAAGCTCCTCTTGGAAGCAGGAAAAGGCTTGGCAACCATTGCCAAGAGCAATGGGAAAACAGCTTTGCATTCTGCTGCAAGGAATGGACATGTTGCAGTTGTGAAAGTGCTTCTTGAGCAGGACAGAGAGATTGCAACTCGAATCGATAAGAAGAGGCAGACGGCGCTTCATATGGCGGTGAAGGGACAGAATCTTGAGGTGGTGGAGGAGCTGATCAAAGGAGATCCATCAACTATAAACTTTGTTGACAATAAGGGAAACACACCATTGCATATAGCATCTAGAAAGGGCAGGGCTCAGATTGTAAAGAAGCTTCTTGAGCAGAAAGAAACAAACAAAAAAGTTGTTAACAGGTCTGGTGAGACTGCATTAGACACTGCTGAAAAAATGGGGAACCATGATGTTAAGAATATTCTGTTAGAACACGGCGTTGTGAACGCCAATGCCTTAGTAAAGTCCCAAGGAATTACGGCCACAACCACAGCCACAGCCACAAACGCAACCACGTCGGCCAGGGAGCTAAAACAAACTGTGAGTGACATCAAACATGAGGTCCACAACCAGTTAGAGCACACCCGACAAACGCGAAAGCGGGTGCAAGGCATAGCAAAGAGAATCAACAAGATGCACCAAGAAGGCCTGAACAATGCAATAAACTCAACAACCGTGGTGGCAGTGCTAATTGCAACGGTGGCATTCGCGGCGATCTTCACAGTCCCGGGGCAGTTTGTTGATGATCCAAACGATGTCCCTGAAGGGTCAACACTTGGTGAAGCAAACATAGCACCACAGGGTGCATTCTTGATCTTCTTTGTGTTTGATTCAATTGCACTTTTCATATCTCTTGCTGTGGTTGTGGTTCAAACTTCGGTGGTGGTTATAGAGAGCAAAGCAAAGAAGCAAATGATGGCTATAATAAACAAGCTAATGTGGTTGGCTTGTGTGCTTATAACTGTTTCATTCTTGGCATTGGCTTTTGTTGTTGTTGGGAAACAAGAGATGTGGCTTGCTATTTCGGTTACTGTTATTGGGACAACAATAATGGTTACAACCTTGGGGACTATGTGTTATTGGGTTATTAAGCACCGTATTCAGGCCTCTAATTTGAAGAACATAAGGAGATCTTCCATGGATACAAATAAGACTAAGTCTTCTTCAGTCACTGCTTACTCCGATTCTGAACTACTAAACAGAATGTATGCCATTTAG 1635 0.4398 MSVTGKKMTKQLTGKRDDTHLHSAARSGSLSVLRETLTGIEDQEELHELLARQNQDGETPLYVAAEYGYVDLVRELIQLYDLADAGIKARNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDQSNTTALHTAATQGYVEIVKLLLEAGKGLATIAKSNGKTALHSAARNGHVAVVKVLLEQDREIATRIDKKRQTALHMAVKGQNLEVVEELIKGDPSTINFVDNKGNTPLHIASRKGRAQIVKKLLEQKETNKKVVNRSGETALDTAEKMGNHDVKNILLEHGVVNANALVKSQGITATTTATATNATTSARELKQTVSDIKHEVHNQLEHTRQTRKRVQGIAKRINKMHQEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNDVPEGSTLGEANIAPQGAFLIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLITVSFLALAFVVVGKQEMWLAISVTVIGTTIMVTTLGTMCYWVIKHRIQASNLKNIRRSSMDTNKTKSSSVTAYSDSELLNRMYAI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0204 544 SMART ANK_2a 193 223 IPR002110 GO:0005515
Amo18g0204 544 SMART ANK_2a 125 154 IPR002110 GO:0005515
Amo18g0204 544 SMART ANK_2a 16 45 IPR002110 GO:0005515
Amo18g0204 544 SMART ANK_2a 261 291 IPR002110 GO:0005515
Amo18g0204 544 SMART ANK_2a 227 257 IPR002110 GO:0005515
Amo18g0204 544 SMART ANK_2a 56 85 IPR002110 GO:0005515
Amo18g0204 544 SMART ANK_2a 159 188 IPR002110 GO:0005515
Amo18g0204 544 SMART ANK_2a 91 120 IPR002110 GO:0005515
Amo18g0204 544 Pfam Ankyrin repeats (3 copies) 8 79 IPR002110 GO:0005515
Amo18g0204 544 Pfam Ankyrin repeats (3 copies) 225 286 IPR002110 GO:0005515
Amo18g0204 544 Pfam Ankyrin repeats (3 copies) 157 217 IPR002110 GO:0005515
Amo18g0204 544 Pfam Ankyrin repeats (3 copies) 84 149 IPR002110 GO:0005515
Amo18g0204 544 MobiDBLite consensus disorder prediction 1 20 - -
Amo18g0204 544 ProSiteProfiles Ankyrin repeat region circular profile. 159 186 - -
Amo18g0204 544 ProSiteProfiles Ankyrin repeat profile. 159 191 IPR002110 GO:0005515
Amo18g0204 544 ProSiteProfiles Ankyrin repeat region circular profile. 56 78 - -
Amo18g0204 544 Pfam Domain of unknown function 354 469 IPR026961 -
Amo18g0204 544 Gene3D - 6 155 IPR036770 -
Amo18g0204 544 Gene3D - 219 371 IPR036770 -
Amo18g0204 544 Gene3D - 156 218 IPR036770 -
Amo18g0204 544 ProSiteProfiles Ankyrin repeat profile. 56 78 IPR002110 GO:0005515
Amo18g0204 544 ProSiteProfiles Ankyrin repeat profile. 125 157 IPR002110 GO:0005515
Amo18g0204 544 ProSiteProfiles Ankyrin repeat region circular profile. 227 249 - -
Amo18g0204 544 ProSiteProfiles Ankyrin repeat region circular profile. 91 113 - -
Amo18g0204 544 ProSiteProfiles Ankyrin repeat profile. 91 123 IPR002110 GO:0005515
Amo18g0204 544 ProSiteProfiles Ankyrin repeat region circular profile. 125 149 - -
Amo18g0204 544 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 4 540 - -
Amo18g0204 544 SUPERFAMILY Ankyrin repeat 21 285 IPR036770 -
Amo18g0204 544 ProSiteProfiles Ankyrin repeat profile. 227 249 IPR002110 GO:0005515
Amo18g0204 544 PANTHER ANKYRIN REPEAT PLANT PROTEIN 4 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0204 Amo-Chr18 2907491 2909301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0204 2 544 Miscellaneous Gene Families AT1G07710 68.373 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0204 - - gmx:100791519 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0204 18 2907491 2909301 Amo18g0204 18 2907491 2909301 ECH
Amo18g0204 18 2907491 2909301 Amo13g0374 13 5085083 5088220 ECH
Amo18g0204 18 2907491 2909301 Amo08g1050 08 17861635 17863445 hybridization