Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0374 ATGGCTACACCAACTGTGCAGCAGGAAGCTGCGGCCGTGGCCGCTGCTCCAAGGAAGAAAATGACCAAGCAATTGACTGGAAAGCGCGACGACACGACCCTGCACTCGGCAGCGAGAGCAGGGAACTTGGCTCTGATAAAGGACACACTTAGTGGTGCTGAAGAGGGTCAACTTCATGAGTTGTTGGCAAAGCAGAACCAAGCTGGGGAAACAGCCCTTTATGTTGCTGCTGAGTATGGTTATGTTGATTTGGTTAAGGAGATGATTCGGTATTATGATCTCGCTGATGCCGGAATCAAGGCTAGGAATGGTTTTGATGCACTCCACATTGCTGCTAAACAAGGGGATCTAGATGTGTTGAAGATCCTTATGGAGGCTCATCCTGAATTGTCAATGACCGTGGATCCCTCGAACACCACGGCTTTGCACACAGCCTCGACACAAGGGCATACTGAGATAGTGAAGTTTCTATTAGAGGCAGGTAGTAGCTTGGCAACCATAGCTAGAAGCAATGGGAAAACAGCTCTGCATTCTGCAGCAAGAAACGGACATTTGGCTGTTGTAAAGGCACTTTTAGAGAAGGAGCCTGGGGTTGTGACACGGACCGATAAGAAGGGCCAGACCGCGCTTCACATGGCGGTGAAAGGGCAGAATCTTGAGGTGGTGGAGGAGTTGATAAAAGGGGATCCCTCATCAGTAAACATGGTTGATAATAAGGGTAATACGGCTTTGCATATTGCAACCCGGAAGGGTAGAGCTCAGATTGTGAAGTTGCTTCTTGGACAGAAAGAAACAGACACCACAGCAGTTAATAAATCCGGCGAAAGTGCATTAGACACTGCTGAGAAAACTGGGAACTCCGAAATCAAAGCCATACTTTCGGAACACGGTGTTCAAAGTGCCAAAGCCATGAAGCCAAAGCCAACAACAGCAGCTAGAGAGTTGAAACAAACAGTGAGTGACATAAAGCATGAAGTCCATTATCAATTAGAACACACGCGCCAGACCAGAAAGCGCGTCCAGGGAATCGCCAAGCGCATCAACAAGATGCATGCTGAAGGACTCAACAATGCAATCAACTCAACCACTGTGGTTGCTGTCCTCATTGCCACAGTTGCCTTTGCAGCTATCTTCACAGTTCCTGGCCAATTTGTTGATGATCCAAAAAACATTCCTAAAGGGATGTCCCTTGGGGAAGCAAACATAGCCCCTACAGCTGCATTCATCATTTTCATTGTCTTCGATTCCATTGCGCTGTTCATCTCCCTAGCCGTCGTGGTGGTGCAGACCTCGATCGTGGTCATAGAGAGCAAAGCTAAGAAGCAGATGATGGCTATCATTAACAAGCTAATGTGGCTGGCTTGTGTGCTTATCACTGTGGCATTCTTGGCACTTTCATTCATAGTTGTTGGAAAAGATCAAAAGTGGCTTGCAATTGGAGTCACAGTTATAGGAACAACTATAATGGCTACAACATTAGGATTAATGTGTTACTGGGTCATTAGGCACAGAATTGAGGCATCAAATTTGAGAAGCATAAGGAAGTCTTCAATGGGAAGCAGGTCAAGATCATTTTCAGTTTCTGTTATGTCAGATACTGAGATACTAAACAATGAGTATAAAAAAATGTATGCGATTTAG 1641 0.4601 MATPTVQQEAAAVAAAPRKKMTKQLTGKRDDTTLHSAARAGNLALIKDTLSGAEEGQLHELLAKQNQAGETALYVAAEYGYVDLVKEMIRYYDLADAGIKARNGFDALHIAAKQGDLDVLKILMEAHPELSMTVDPSNTTALHTASTQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLAVVKALLEKEPGVVTRTDKKGQTALHMAVKGQNLEVVEELIKGDPSSVNMVDNKGNTALHIATRKGRAQIVKLLLGQKETDTTAVNKSGESALDTAEKTGNSEIKAILSEHGVQSAKAMKPKPTTAARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKNIPKGMSLGEANIAPTAAFIIFIVFDSIALFISLAVVVVQTSIVVIESKAKKQMMAIINKLMWLACVLITVAFLALSFIVVGKDQKWLAIGVTVIGTTIMATTLGLMCYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDTEILNNEYKKMYAI* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0374 546 Pfam Ankyrin repeats (3 copies) 237 298 IPR002110 GO:0005515
Amo13g0374 546 Pfam Ankyrin repeats (3 copies) 96 164 IPR002110 GO:0005515
Amo13g0374 546 Pfam Ankyrin repeats (3 copies) 171 233 IPR002110 GO:0005515
Amo13g0374 546 Pfam Ankyrin repeats (3 copies) 20 91 IPR002110 GO:0005515
Amo13g0374 546 ProSiteProfiles Ankyrin repeat region circular profile. 137 164 - -
Amo13g0374 546 SUPERFAMILY Ankyrin repeat 33 298 IPR036770 -
Amo13g0374 546 PANTHER ANKYRIN REPEAT PLANT PROTEIN 9 546 - -
Amo13g0374 546 ProSiteProfiles Ankyrin repeat profile. 137 169 IPR002110 GO:0005515
Amo13g0374 546 ProSiteProfiles Ankyrin repeat region circular profile. 171 194 - -
Amo13g0374 546 MobiDBLite consensus disorder prediction 1 33 - -
Amo13g0374 546 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 9 546 - -
Amo13g0374 546 Gene3D - 168 346 IPR036770 -
Amo13g0374 546 Gene3D - 6 167 IPR036770 -
Amo13g0374 546 ProSiteProfiles Ankyrin repeat profile. 205 227 IPR002110 GO:0005515
Amo13g0374 546 ProSiteProfiles Ankyrin repeat region circular profile. 103 125 - -
Amo13g0374 546 Pfam Domain of unknown function 353 469 IPR026961 -
Amo13g0374 546 ProSiteProfiles Ankyrin repeat region circular profile. 239 260 - -
Amo13g0374 546 ProSiteProfiles Ankyrin repeat profile. 239 260 IPR002110 GO:0005515
Amo13g0374 546 ProSiteProfiles Ankyrin repeat profile. 103 135 IPR002110 GO:0005515
Amo13g0374 546 ProSiteProfiles Ankyrin repeat profile. 171 203 IPR002110 GO:0005515
Amo13g0374 546 ProSiteProfiles Ankyrin repeat region circular profile. 205 227 - -
Amo13g0374 546 SMART ANK_2a 171 201 IPR002110 GO:0005515
Amo13g0374 546 SMART ANK_2a 239 269 IPR002110 GO:0005515
Amo13g0374 546 SMART ANK_2a 137 166 IPR002110 GO:0005515
Amo13g0374 546 SMART ANK_2a 205 235 IPR002110 GO:0005515
Amo13g0374 546 SMART ANK_2a 103 132 IPR002110 GO:0005515
Amo13g0374 546 SMART ANK_2a 68 97 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0374 Amo-Chr13 5085083 5088220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0374 7 546 Miscellaneous Gene Families AT1G07710 73.333 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0374 - - gmx:100791519 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0374 13 5085083 5088220 Amo13g0374 13 5085083 5088220 ECH
Amo18g0204 18 2907491 2909301 Amo13g0374 13 5085083 5088220 ECH