Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0049 ATGATGAGTTTTTCTAAAGATGGACCAGTTGACTCAATGGAATCTGAAGAAGCTGCTGATACTGTACCTCCTAAGGAAAGAAGATTTGCTGTCTTGGCATCTACTGTTTTATCAAGCCAAACTAAGGGGCATGTTTCTCAAGGAGCAACTAAACGTCTTCGGCTAAATGGTCTGCTTACTGCTGATACAATCAACAAAGCTGATGAAGAAACCATCAGAAAGTTGATTTACCCTGTTGGATTTTATAAGAGAAAAGCCAGCAACTTGAAAAAGATTGCAGATATTTGTCTCATGAAATATGATGGAGACATACCTAATTCAGTTGAGGAACTGCTCTTACTTCCAGGTGTAGGTCCTAAGATAGCTTATTTGGTTATGATTCTTGGATGGAACAACGTTCAAGGGATATGCGTCGATACTCATGTCCACCGCATTTGCAATCGCCTTGGATGGGTTTCCAGAGCAGGCACAAAGCAGAAAACATCAACACCGGAAGAAACAAGAAAGGCGTTGCAGCGTTGGCTCCCAAGAGAAGAATGGGTTCCAATAAATCCCCTTATGGTAGATTTTGGTCGAACAATTTGCACTCCTTTACGACCTCATTGTGGAAAGTGTTGCATAAGTAGTCTGTGCCCATCAGCATTCACAGAGACTTCAAAGCCATCTTCCAAATCCAATAAAATCGAACAAATCATGCTTGCTATATCTAGATCTTGTGAATCTAAATCTGGAATCTTCAAAGCTTCAATGGCATCTCTGAAGTCTTGA 768 0.4076 MMSFSKDGPVDSMESEEAADTVPPKERRFAVLASTVLSSQTKGHVSQGATKRLRLNGLLTADTINKADEETIRKLIYPVGFYKRKASNLKKIADICLMKYDGDIPNSVEELLLLPGVGPKIAYLVMILGWNNVQGICVDTHVHRICNRLGWVSRAGTKQKTSTPEETRKALQRWLPREEWVPINPLMVDFGRTICTPLRPHCGKCCISSLCPSAFTETSKPSSKSNKIEQIMLAISRSCESKSGIFKASMASLKS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0049 255 SMART endo3end 37 193 IPR003265 GO:0006284
Amo18g0049 255 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 2 225 - -
Amo18g0049 255 Gene3D - 129 216 IPR023170 -
Amo18g0049 255 ProSitePatterns Endonuclease III family signature. 102 131 IPR004036 -
Amo18g0049 255 Pfam HhH-GPD superfamily base excision DNA repair protein 34 176 IPR003265 GO:0006284
Amo18g0049 255 SMART ccc3 194 214 IPR003651 GO:0051539
Amo18g0049 255 MobiDBLite consensus disorder prediction 1 24 - -
Amo18g0049 255 Pfam Helix-hairpin-helix motif 99 126 IPR000445 GO:0003677
Amo18g0049 255 CDD ENDO3c 29 191 IPR003265 GO:0006284
Amo18g0049 255 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 2 225 - -
Amo18g0049 255 Gene3D Hypothetical protein; domain 2 18 128 - -
Amo18g0049 255 MobiDBLite consensus disorder prediction 10 24 - -
Amo18g0049 255 SUPERFAMILY DNA-glycosylase 23 218 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0049 Amo-Chr18 1157456 1159709 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0049 K10773 - gmx:100818398 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0049 18 1157456 1159709 Amo18g0049 18 1157456 1159709 ECH
Amo18g0049 18 1157456 1159709 Amo13g0582 13 7373542 7377657 PCT
Amo13g0582 13 7373542 7377657 Amo18g0049 18 1157456 1159709 PCT