Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0582 ATGTTGGTCTTTTCGATTACACCTCGATCCTTTGGTTTGGGGCGAATCAAAGTCTCGTTTTTGATGACTCAAACAACGCCATCTCTTCCCTCCAATTTCAACACCGACACACCCACCTCGGACTCCTCCTCTCACGCTGCTTCTGTGTCCAAAGCTCGTGTCTTTGTGAGGAGAAGCAAGAGGCCCAAAACCACTCTTGTGGCACTTCAACAAAAGGAGCTTCAGCCCCCAACACGTGATCATGACAAAAGTTCTGGCCTTCCTGAAATTGAAGATTTTACATACAGTGGAGCAAATAATGCATTTACTCAATCCAGTAAATCAGAATTGGGCTTGGACGCGACTCTTGTGGAAAGTGAAGCTACTTCACCTAGACACAGTGGTGAATTACCTGCACACTGGGAAAGGGTGCTTGAGGGGATTCGCAGAATGAGGTGTTCTGCAGAAGCACCGGTAGACACTATGGGATGTGAGAAAGCTGGCGATACTCTACCTCCTAAGGAAAGAAGATTTGCTGTCCTAGTTTCTTCTCTTTTGTCAAGCCAAACCAAAGATCATGTTACTCATGGAGCAATCCAACGTCTTCTTGAAAATGGCCTACTTACCCCTGACGCAATCAACAATGCTGATGAAGAAACCATCAAAAAGATGCTTTACCCTGTTGGGTTCTATACAAGAAAAGCCACCAACTTGAAAAAAATCGCAAACATTTGTCTCATGAAGTATGACGGAGACATACCTAGCACAATTGAGCAATTACTCTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTCATGAATGTTGGATGGAACAATGTTCAAGGAATATGTGTTGATACTCATGTCCACCGCATCTGCAATCGGCTTGGATGGGTGTCTAGACCCAGCACAAAACAGAAAACTCTAACACCTGAAGAAACAAGAGAGGCATTGCAAAGATGGCTTCCAAGGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACAAACCATTTGCACTCCCTTGAGACCTCGTTGTGGAGAATGTGGTATTAGTCATTTGTGCCCCTCGGCATTCAAGGAGGCCTCTAACTCAAGCCCATCTTCCAAGCCCAAAAAGTCTGGGCCTAACAAGAAGCGTTAG 1137 0.4503 MLVFSITPRSFGLGRIKVSFLMTQTTPSLPSNFNTDTPTSDSSSHAASVSKARVFVRRSKRPKTTLVALQQKELQPPTRDHDKSSGLPEIEDFTYSGANNAFTQSSKSELGLDATLVESEATSPRHSGELPAHWERVLEGIRRMRCSAEAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDHVTHGAIQRLLENGLLTPDAINNADEETIKKMLYPVGFYTRKATNLKKIANICLMKYDGDIPSTIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRPSTKQKTLTPEETREALQRWLPREEWVPINPLLVGFGQTICTPLRPRCGECGISHLCPSAFKEASNSSPSSKPKKSGPNKKR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0582 378 SUPERFAMILY DNA-glycosylase 142 368 IPR011257 GO:0003824|GO:0006281
Amo13g0582 378 ProSitePatterns Endonuclease III family signature. 244 273 IPR004036 -
Amo13g0582 378 MobiDBLite consensus disorder prediction 357 378 - -
Amo13g0582 378 Gene3D - 269 359 IPR023170 -
Amo13g0582 378 SMART ccc3 336 356 IPR003651 GO:0051539
Amo13g0582 378 MobiDBLite consensus disorder prediction 70 90 - -
Amo13g0582 378 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 68 376 - -
Amo13g0582 378 CDD ENDO3c 171 333 IPR003265 GO:0006284
Amo13g0582 378 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 337 353 IPR004035 -
Amo13g0582 378 Hamap Endonuclease III-like protein 1 [NTHL1]. 130 359 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Amo13g0582 378 Pfam Helix-hairpin-helix motif 241 269 IPR000445 GO:0003677
Amo13g0582 378 Pfam HhH-GPD superfamily base excision DNA repair protein 175 303 IPR003265 GO:0006284
Amo13g0582 378 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 68 376 - -
Amo13g0582 378 SMART endo3end 179 335 IPR003265 GO:0006284
Amo13g0582 378 MobiDBLite consensus disorder prediction 27 49 - -
Amo13g0582 378 MobiDBLite consensus disorder prediction 27 54 - -
Amo13g0582 378 Gene3D Hypothetical protein; domain 2 157 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0582 Amo-Chr13 7373542 7377657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0582 K10773 - gmx:100818398 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0049 18 1157456 1159709 Amo13g0582 13 7373542 7377657 PCT
Amo13g0582 13 7373542 7377657 Amo18g0049 18 1157456 1159709 PCT