Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0032 ATGCCAGCTATTTTGCTTCTATACAACATTCTAAATTCATTCCTTATTTCTCTCATTCCAAAGAAGCTAAGACCCTTCTTTCCCTTCTCTTGGTTCCCCCACCAAACAAACAACACTTCTTCTTCTTCTTCTTCCTCCTCTTCATCACCAAGAAGGGCCAGCAGGGCCATTATCATCACCAAGACAAGAATAATGGACCCAAATGAGCTCAGGCGAGTCTTCCAGATGTTCGACCGGAATGGAGACGGGAGAATCTCCAGGAGCGAGTTGACAGTCTCCCTGGAGAATCTCGGGATCTTCATTCCGGACAAGGAACTAGCTCAGATGATCGACAAGATTGATGCCAATGGGGATGGATTTGTGGATGTTGAAGAGTTTGGGGAGCTGTACGAGTCTATAATGGTGGAACGTGGTGATGAGGAGGAAGACATGAAGGAAGCTTTCAACGTGTTTGACCAGAATGGAGATGGGTTCATCAGCGTGGAGGAGTTGAGGGCGGTCTTGTCTTCCTTGGGGCTCAAGCAAGGTAGAACCGATGAAGATTGCAAGAAGATGATAATGAAGGTGGACGCTGATGGTGATGGCATGGTTAACTATGGAGAATTCAAGCAAATGATGAAGGGTGGTGGATTCAGTGCTCTCAGTTAA 648 0.4645 MPAILLLYNILNSFLISLIPKKLRPFFPFSWFPHQTNNTSSSSSSSSSSPRRASRAIIITKTRIMDPNELRRVFQMFDRNGDGRISRSELTVSLENLGIFIPDKELAQMIDKIDANGDGFVDVEEFGELYESIMVERGDEEEDMKEAFNVFDQNGDGFISVEELRAVLSSLGLKQGRTDEDCKKMIMKVDADGDGMVNYGEFKQMMKGGGFSALS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0032 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 213 - -
Amo18g0032 215 Pfam EF-hand domain pair 141 207 IPR002048 GO:0005509
Amo18g0032 215 Pfam EF-hand domain pair 69 130 IPR002048 GO:0005509
Amo18g0032 215 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Amo18g0032 215 CDD EFh 143 207 IPR002048 GO:0005509
Amo18g0032 215 SUPERFAMILY EF-hand 68 209 IPR011992 -
Amo18g0032 215 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
Amo18g0032 215 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Amo18g0032 215 Gene3D - 138 209 - -
Amo18g0032 215 ProSitePatterns EF-hand calcium-binding domain. 114 126 IPR018247 -
Amo18g0032 215 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Amo18g0032 215 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Amo18g0032 215 SMART efh_1 69 97 IPR002048 GO:0005509
Amo18g0032 215 SMART efh_1 181 209 IPR002048 GO:0005509
Amo18g0032 215 SMART efh_1 105 133 IPR002048 GO:0005509
Amo18g0032 215 SMART efh_1 143 171 IPR002048 GO:0005509
Amo18g0032 215 Gene3D - 30 137 - -
Amo18g0032 215 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Amo18g0032 215 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Amo18g0032 215 PANTHER BNAA04G25000D PROTEIN 3 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0032 Amo-Chr18 963439 964856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0032 1 213 EF-hand Containing Proteins AT2G43290 64.055 1.11e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0032 K13448 - zju:107422102 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0032 18 963439 964856 Amo18g0032 18 963439 964856 ECH
Amo18g0032 18 963439 964856 Amo13g0591 13 7479385 7480398 PCT