Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0591 ATGGATTCGGCCGAACTCCAGCGCGTTTTTCAAATGTTTGACCGCAATGGAGACGGCCGAATCTCGAAAAAGGAACTCAACGATTCTTTGGAAAAGCTTGGGATCTATATCCCGGACAAAGAGCTTGACCAAATGATCGAAAAAATCGACGTTAATGGAGACGGTTGGGTGGACATGGAAGAGTTTGGCGAACTCTACATGTCTATAATGGACGAACGCGAGGAGCGCGACGAGGAGGAAGACATGAAGGAAGCCTTCAACGTATTCGATCAGAACGGAGACGGTTACATCACGGTGGAGGAGCTTAGATCGGTACTTTCTTCCTTGGGGCTGAAGCAAGGGAGGACGGTGGAGGAGTGCCGGAAGATGATAATGAAGGTGGACCGCGACGGCGACGGCATGGTTGATTACAAAGAATTCAAGCAGATGATGAAAGGAGGAGGATTCAGTGCTCTTGGTTCAGATTAA 468 0.4893 MDSAELQRVFQMFDRNGDGRISKKELNDSLEKLGIYIPDKELDQMIEKIDVNGDGWVDMEEFGELYMSIMDEREERDEEEDMKEAFNVFDQNGDGYITVEELRSVLSSLGLKQGRTVEECRKMIMKVDRDGDGMVDYKEFKQMMKGGGFSALGSD* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0591 155 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Amo13g0591 155 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Amo13g0591 155 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Amo13g0591 155 SMART efh_1 5 33 IPR002048 GO:0005509
Amo13g0591 155 SMART efh_1 81 109 IPR002048 GO:0005509
Amo13g0591 155 SMART efh_1 119 147 IPR002048 GO:0005509
Amo13g0591 155 SMART efh_1 41 69 IPR002048 GO:0005509
Amo13g0591 155 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Amo13g0591 155 Pfam EF-hand domain pair 79 145 IPR002048 GO:0005509
Amo13g0591 155 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Amo13g0591 155 CDD EFh 83 145 IPR002048 GO:0005509
Amo13g0591 155 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Amo13g0591 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 152 - -
Amo13g0591 155 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 152 - -
Amo13g0591 155 ProSitePatterns EF-hand calcium-binding domain. 90 102 IPR018247 -
Amo13g0591 155 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Amo13g0591 155 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Amo13g0591 155 Gene3D - 2 71 - -
Amo13g0591 155 Gene3D - 72 147 - -
Amo13g0591 155 SUPERFAMILY EF-hand 4 147 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0591 Amo-Chr13 7479385 7480398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0591 1 155 EF-hand Containing Proteins AT3G07490 75.484 3.21e-77 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0591 K13448 - qsu:112002913 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0032 18 963439 964856 Amo13g0591 13 7479385 7480398 PCT