Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0019 ATGCAGATGCTCTCAAGGGCTTCATCTGCCATGGCCACCTTCCCTCCCTCTAGGGTGAGAAGTGGGTTTTGTATGTGGCCAAATGCAAGACAACTTTGCTTTAGAAAAGGGATTCTGTATGGATTCATGAGGTTGTTTTCTACACCATTGAAAACGCTTCGGGTAGCTAGTCGTTCAATCCGAGTAGGACGATTTTGCAGTGTTGCCAGCATGTCTTCCTCCTTGCAGATTGAATTGGTACCATGCTTGAGAGACAATTATGCYTATCTYTTGCATGATGTGAACACGGGTACTGTTGGTGTCGTCGATCCTTCTGAAGCTGTGCCTATCATTGATGCATTGAGCAGGAAAAATATAAATTTGACATACATACTCAACACTCACCATCATTATGATCACACTGGTGGAAATGAAGAGTTGAAAGCAAGATATGGAGCAAAGGTGATTGGTTCAGGAATTGACAAGGAAAGGATTCCTGGCATTGATATCTATTTGAATGATGGCGATAAGTGGATGTTTGCTGGCCACGAGGTGCATGTTATGGACACACCTGGTCACACTCGAGGCCATATAAGCTTTTACTTTCCTGGATCTAAGGCGATATTTACCGGAGACACTCTGTTCAGCTTATCGTGTGGCAAGCTTTTTGAAGGAACTCCTGAACAGATGCAATCGTCTCTTACAAAGATAATGTCCTTGCCAGACGAAACAAGCATCTACTGTGGACATGAGTATACATTGAGTAATTCAAAGTTTGCACTGTCCATTGAGCCTGGAAACAAGGAGCTTCAATCGTATGCTGCGCATGTAGCTTCCCTTCGAAGCAAGGGCATGCCGACGATTCCAACAACACTGAAGACGGAAAAGGCCACAAATCCATTCCTTCGAACGTCCAGCGCAGAAATCCGGCGAGTATTAAAGATTGCAGATACGGCCGACGATGCAGAAACCCTGGGCGTCATTCGGCAAGCAAAGGATAATTTTTAG 987 0.4468 MQMLSRASSAMATFPPSRVRSGFCMWPNARQLCFRKGILYGFMRLFSTPLKTLRVASRSIRVGRFCSVASMSSSLQIELVPCLRDNYAYLLHDVNTGTVGVVDPSEAVPIIDALSRKNINLTYILNTHHHYDHTGGNEELKARYGAKVIGSGIDKERIPGIDIYLNDGDKWMFAGHEVHVMDTPGHTRGHISFYFPGSKAIFTGDTLFSLSCGKLFEGTPEQMQSSLTKIMSLPDETSIYCGHEYTLSNSKFALSIEPGNKELQSYAAHVASLRSKGMPTIPTTLKTEKATNPFLRTSSAEIRRVLKIADTADDAETLGVIRQAKDNF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0019 328 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 328 IPR036866 -
Amo18g0019 328 PANTHER BETA LACTAMASE DOMAIN 3 328 - -
Amo18g0019 328 Gene3D - 75 328 IPR036866 -
Amo18g0019 328 PANTHER HYDROXYACYLGLUTATHIONE HYDROLASE 3 328 - -
Amo18g0019 328 TIGRFAM GSH_gloB: hydroxyacylglutathione hydrolase 78 328 IPR017782 GO:0004416|GO:0019243
Amo18g0019 328 Hamap Hydroxyacylglutathione hydrolase [gloB]. 75 328 IPR017782 GO:0004416|GO:0019243
Amo18g0019 328 CDD hydroxyacylglutathione_hydrolase_MBL-fold 80 243 IPR035680 -
Amo18g0019 328 Pfam Metallo-beta-lactamase superfamily 88 243 IPR001279 -
Amo18g0019 328 Pfam Hydroxyacylglutathione hydrolase C-terminus 244 328 IPR032282 -
Amo18g0019 328 SMART Lactamase_B_5a 85 243 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0019 Amo-Chr18 875348 878728 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0019 K01069 - gmx:100816314 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0019 18 875348 878728 Amo18g0019 18 875348 878728 ECH
Amo18g0019 18 875348 878728 Amo13g0623 13 7730034 7733634 PCT
Amo13g0623 13 7730034 7733634 Amo18g0019 18 875348 878728 PCT