Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3154 ATGTTGAGGATCCCGGACAACAACAACACCAATAGAAGGAACAACCTTGAAACTACCAGGAATCGCAGAGACGACAATGAATCTTCCTTGTTCGGTGGCGTTCCCAATAACACCTCGCCGCCATTGATGAACCTTCGCCCCGACCACGTTGCCGTCGGCTCACCTCTCACCAACAGAGCCCCTTTCACCACCACCAACAACAACAACGCCGCCGCCTCTCGTTTCTCGGCCGCAGACGGTGGCCCTGTCGGCAGTTCTCCTTATCCAGCTCAGTATCGCGGCGACCACTGTCTCTGGATGGACACCGATCAGGCGTCGGGATTCCACGTGGCAAACACCACCTTCGGCGCCGACAAATGGGTCGACGATCTGGGAGGAGGAGGAGGAAACGCACTGGCCAACAACTTCTCAAGAATGAGCATCGTCGAAAACGGAACCACCAAAAGCAGAAGCCCATACGACGTCGTGGAGGCTTACAGCAACAACAACAACGCATGCTCCATTGATTCCAATAACCTCCCTTTCTTCGATGAAACAACACCGCCGCCATTCTGCAACAACGCTGCTGGGGTTCCCGTATCGCAGCATTTCGGCGTCGAGTGTGAACCTCCCAATGGATGGGGCGGCGGCGTCAAGAACCCCTTCAGATTCTCTCAGATAATGCACCCTAGGCTCCCAGCGAATGCGCCCAGGGATATGGCGGCAATGGCAGTTGCTGCTGCCGCCGCCGCCGCTAACAGCGGTGAGTTTCCTCAGTGTATTTCTCCGATGAGAAATGGTGGTGACCGTGCTGCCTTTAGATGCGATAACAGCGTCATTATCCAAGGAAGAGAAATGGTAAAACCCTGCGTGGAAAGCACTGGTTACGGTGGTTCCGTAAGAGGTTTCAAGAAGGGTCACGGTCAAGGACAGGGTTACGTGTACAACATGGCGAAGGACCAGAACGGTTGCAGGTTTTTGCAGAGGATGGTTGAAGAAGGCACCTTTGAGGATGTAAGGGTGGTTTTTGAAGGGATCGTTGAGAATGTTGTGGAGCTCATGATGGACCCTTTTGGTAACTACCTTGTTCAGAAGCTTCTAGATGTTTGCAATGAAGATCAAAGGTTGCAAATTGTTCTCATGCTCACTAAAGAACAAGGCCAGCTTGTCCGAATCTCCTTGAATACCCACGGTACGCGCGTGGTGCAGAAGCTGATTGAGACCCTCAACTCAGCGAAGCAAATTTCATTGGTGAAGGGTGCAATTCAACCAGGTTTCCTTGACCTTATTAAGGATCTCAATGGAAACCATGTCATACAACGTTGCCTGCAATGTCTTAGCTGTCAAGATAATGAGTTTATTTTTGAAGCTGGTGTAAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGCTGTGTACTACAACGTTGCATTGATTATTCCGTTGGAAAACATCGTGAGAGGCTGGTCGCAGAAATTTGCAAGCATGGTCTTCTCCTCGCTCAGGATCCATTTGGAAACTATGTTGTTCAGTATATTATAGAGATAGAGAACCCAACTGCCTCAACGAAATTGATGTCTCAGCTGAAAGGGAATTTTGTGAACCTGTCTACACAAAAATTCAGCAGCCATGTGGTTGAGAAATGCCTCAAGCATGTTGCAGATAGCAGGTCCAGAATTGTCCGTGAATTGCTCTCTACACCCCACTTTGAGCAGTTATTGCAAGACCCTTATGCCAACTACGTCATTCAATCTGCTCTTGCATATACCAAGGGTGCACTTCATGTATCATTGGTGGAAGCAGTTAGGCCTTACAAGATCTTGCGCACTAGTCCATACTGCAAGAGGATATTCTCTGGAAGCCTACTTAAGAAAAACTTTCAATACACTTATCTTGTTACTAATGAATAA 1893 0.4876 MLRIPDNNNTNRRNNLETTRNRRDDNESSLFGGVPNNTSPPLMNLRPDHVAVGSPLTNRAPFTTTNNNNAAASRFSAADGGPVGSSPYPAQYRGDHCLWMDTDQASGFHVANTTFGADKWVDDLGGGGGNALANNFSRMSIVENGTTKSRSPYDVVEAYSNNNNACSIDSNNLPFFDETTPPPFCNNAAGVPVSQHFGVECEPPNGWGGGVKNPFRFSQIMHPRLPANAPRDMAAMAVAAAAAAANSGEFPQCISPMRNGGDRAAFRCDNSVIIQGREMVKPCVESTGYGGSVRGFKKGHGQGQGYVYNMAKDQNGCRFLQRMVEEGTFEDVRVVFEGIVENVVELMMDPFGNYLVQKLLDVCNEDQRLQIVLMLTKEQGQLVRISLNTHGTRVVQKLIETLNSAKQISLVKGAIQPGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFEAGVKFCVDIATHRHGCCVLQRCIDYSVGKHRERLVAEICKHGLLLAQDPFGNYVVQYIIEIENPTASTKLMSQLKGNFVNLSTQKFSSHVVEKCLKHVADSRSRIVRELLSTPHFEQLLQDPYANYVIQSALAYTKGALHVSLVEAVRPYKILRTSPYCKRIFSGSLLKKNFQYTYLVTNE* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 563 584 IPR001313 GO:0003723
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 455 488 IPR001313 GO:0003723
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 307 339 IPR001313 GO:0003723
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 526 559 IPR001313 GO:0003723
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 342 372 IPR001313 GO:0003723
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 419 449 IPR001313 GO:0003723
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 493 521 IPR001313 GO:0003723
Amo17g3154 630 Pfam Pumilio-family RNA binding repeat 381 408 IPR001313 GO:0003723
Amo17g3154 630 MobiDBLite consensus disorder prediction 1 15 - -
Amo17g3154 630 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 304 619 - -
Amo17g3154 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 414 449 IPR001313 GO:0003723
Amo17g3154 630 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 275 619 IPR033133 GO:0003723
Amo17g3154 630 CDD Pumilio 305 613 IPR033712 GO:0003723
Amo17g3154 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 450 485 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 338 373 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 414 449 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 486 521 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 450 485 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 377 412 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 302 337 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 522 556 IPR001313 GO:0003723
Amo17g3154 630 SMART pum_5 559 594 IPR001313 GO:0003723
Amo17g3154 630 MobiDBLite consensus disorder prediction 1 45 - -
Amo17g3154 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 522 560 IPR001313 GO:0003723
Amo17g3154 630 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 304 619 - -
Amo17g3154 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 377 412 IPR001313 GO:0003723
Amo17g3154 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 486 521 IPR001313 GO:0003723
Amo17g3154 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 302 337 IPR001313 GO:0003723
Amo17g3154 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 338 374 IPR001313 GO:0003723
Amo17g3154 630 SUPERFAMILY ARM repeat 303 612 IPR016024 -
Amo17g3154 630 Gene3D - 301 619 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3154 Amo-Chr17 135981271 135986999 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3154 - - aip:107608433 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3154 17 135981271 135986999 Amo17g3154 17 135981271 135986999 ECH
Amo08g1032 08 17617680 17623252 Amo17g3154 17 135981271 135986999 hybridization
Amo17g3154 17 135981271 135986999 Amo08g1032 08 17617680 17623252 PCT
Amo17g3154 17 135981271 135986999 Amo17g3154 17 135981271 135986999 PCT
Amo08g1032 08 17617680 17623252 Amo17g3154 17 135981271 135986999 PCT