Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1032 ATGTTGAGGATCCCGGACAACAACAACACCAATAGAAGGAACAACCTTGAAACTACCAGGAATCGCAGAGACGACAATGAATCTTCCTTGTTCGGTGGCGTTCCCAATAACACCTCGCCGCCATTGATGAACCTTCGCCCCGACCACGTTGCCGTCGGCTCACCTCTCACCAACAGAGCCCCTTTCACCACCACCAACAACAACAACGCCGCCGCCTCTCGTTTCTCGGCCGCAGACGGTGGCCCTGTCGGCAGTTCTCCTTATCCAGCTCAGTTTCGCGGCGACCACTGTCTCTGGATGGACACCGATCAGGCGTCGGGATTCCACGTGGCAAACACCACCTTCGGCGCCGACAAATGGGTCGACGATCTGGGAGGAGGAGGAGGAAACGCACTGGCCAACAACTTCTCAAGAATGAGCATCGTCGAAAACGGAACCACCAAAAGCAGAAGCCCATACGACGTCGTGGAGGCTTACAGCAACAACAACAACGCATGCTCCATTGATTCCAATAACCTCCCTTTCTTCGATGAAACAACACCGCCGCCATTCTGCAACAACGCTGCTGGGGTTCCCGTATCGCAGCATTTCGGCGTCGAGTGTGAACCTCCCAATGGATGGGGCGGCGGCGTCAAGAACCCCTTCAGATTCTCTCAGATAATGCACCCTAGGCTCCCAGCGAATGCGCCCAGGGATATGGCGGCAATGGCAGTTGCTGCTGCCGCCGCCGCCGCTAACAGCGGTGAGTTTCCTCAGTGTATTTCTCCGATGAGAAATGGTGGTGACCGTGCTGCCTTTAGATGCGATAACAGCGTCATTATCCAAGGAAGAGAAATGGTAAAACCCTGCGTGGAAAGCACTGGTTACGGTGGTTCCGTAAGAGGTTTCAAGAAGGGTCACGGTCAAGGACAGGGTTACGTGTACAACATGGCGAAGGACCAGAACGGTTGCAGGTTTTTGCAGAGGATGGTTGAAGAAGGCACCTTTGAGGATGTAAGGGTGGTTTTTGAAGGGATCGTTGAGAATGTTGTGGAGCTCATGATGGACCCTTTTGGTAACTACCTTGTTCAGAAGCTTCTAGATGTTTGCAATGAAGATCAAAGGTTGCAAATTGTTCTCATGCTCACTAAAGAACAAGGCCAGCTTGTCCGAATCTCCTTGAATACCCACGGTACGCGCGTGGTGCAGAAGCTGATTGAGACCCTCAACTCAGCGAAGCAAATTTCATTGGTGAAGGGTGCAATTCAACCAGGTTTCCTTGACCTTATTAAGGATCTCAATGGAAACCATGTCATACAACGTTGCTTGCAATGTCTTAGCTGTCAAGATAATGAGTTTATTTTTGAAGCTGGTGTAAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGCTGTGTACTACAACGTTGCATTGATTATTCCGTTGGAAAACATCGTGAGAGGCTGGTCGCAGAAATTTGCAAGCATGGTCTTCTCCTCGCTCAGGATCCATTTGGAAACTATGTTGTTCAGTATATTATAGAGATAGAGAACCCAACTGCCTCAACGAAATTGATGTCTCAGCTGAAAGGGAATTTTGTGAACCTGTCTACACAAAAATTCAGCAGCCATGTGGTTGAGAAATGCCTCAAGCATGTTGCAGATAGCAGGTCCAGAATTGTCCGTGAATTGCTCTCTACACCCCACTTTGAGCAGTTATTGCAAGACCCTTATGCCAACTACGTCATTCAATCTGCTCTTGCATATACCAAGGGTGCACTTCATGTATCATTGGTGGAAGCAGTTAGGCCATACAAGATCTTGCGCACTAGTCCATACTGCAAGAGGATATTCTCTGGAAGTCTACTTAAGAAAAACTTTCAATACACTTATCTTGTTACTAATGAATAA 1893 0.4865 MLRIPDNNNTNRRNNLETTRNRRDDNESSLFGGVPNNTSPPLMNLRPDHVAVGSPLTNRAPFTTTNNNNAAASRFSAADGGPVGSSPYPAQFRGDHCLWMDTDQASGFHVANTTFGADKWVDDLGGGGGNALANNFSRMSIVENGTTKSRSPYDVVEAYSNNNNACSIDSNNLPFFDETTPPPFCNNAAGVPVSQHFGVECEPPNGWGGGVKNPFRFSQIMHPRLPANAPRDMAAMAVAAAAAAANSGEFPQCISPMRNGGDRAAFRCDNSVIIQGREMVKPCVESTGYGGSVRGFKKGHGQGQGYVYNMAKDQNGCRFLQRMVEEGTFEDVRVVFEGIVENVVELMMDPFGNYLVQKLLDVCNEDQRLQIVLMLTKEQGQLVRISLNTHGTRVVQKLIETLNSAKQISLVKGAIQPGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFEAGVKFCVDIATHRHGCCVLQRCIDYSVGKHRERLVAEICKHGLLLAQDPFGNYVVQYIIEIENPTASTKLMSQLKGNFVNLSTQKFSSHVVEKCLKHVADSRSRIVRELLSTPHFEQLLQDPYANYVIQSALAYTKGALHVSLVEAVRPYKILRTSPYCKRIFSGSLLKKNFQYTYLVTNE* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 563 584 IPR001313 GO:0003723
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 455 488 IPR001313 GO:0003723
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 307 339 IPR001313 GO:0003723
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 526 559 IPR001313 GO:0003723
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 342 372 IPR001313 GO:0003723
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 419 449 IPR001313 GO:0003723
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 493 521 IPR001313 GO:0003723
Amo08g1032 630 Pfam Pumilio-family RNA binding repeat 381 408 IPR001313 GO:0003723
Amo08g1032 630 MobiDBLite consensus disorder prediction 1 15 - -
Amo08g1032 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 414 449 IPR001313 GO:0003723
Amo08g1032 630 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 275 619 IPR033133 GO:0003723
Amo08g1032 630 CDD Pumilio 305 613 IPR033712 GO:0003723
Amo08g1032 630 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 304 619 - -
Amo08g1032 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 450 485 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 338 373 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 414 449 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 486 521 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 450 485 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 377 412 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 302 337 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 522 556 IPR001313 GO:0003723
Amo08g1032 630 SMART pum_5 559 594 IPR001313 GO:0003723
Amo08g1032 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 522 560 IPR001313 GO:0003723
Amo08g1032 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 377 412 IPR001313 GO:0003723
Amo08g1032 630 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 304 619 - -
Amo08g1032 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 486 521 IPR001313 GO:0003723
Amo08g1032 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 302 337 IPR001313 GO:0003723
Amo08g1032 630 MobiDBLite consensus disorder prediction 1 44 - -
Amo08g1032 630 ProSiteProfiles Pumilio RNA-binding repeat profile. 338 374 IPR001313 GO:0003723
Amo08g1032 630 SUPERFAMILY ARM repeat 303 612 IPR016024 -
Amo08g1032 630 Gene3D - 301 619 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1032 Amo-Chr8 17617680 17623252 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1032 - - aip:107608433 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1032 08 17617680 17623252 Amo17g3154 17 135981271 135986999 hybridization
Amo17g3154 17 135981271 135986999 Amo08g1032 08 17617680 17623252 PCT
Amo08g1032 08 17617680 17623252 Amo17g3154 17 135981271 135986999 PCT