Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3068 AAGTTTGTGAAAAGGAGGAGGAAGCAGACAGGTGGTGAGGGAAGCAAAACGATTTATTTGACAAGAAACGTGACTGAGATTCCAATTGGATTCGATTATTTGGGGCTGAAATTGAAGGGTTTTCCTGTTCTCCGTCATATTCCATCTTTGATGTCTTCCAATTCGTACCGAGGAGGTTCCGCCTACGGTGATGCCGCCCCTTTCCGATCCAGAGAGGGACTTAGCACGAGACCAGCTGCTTCCTCCGATGAAATCCAATTGCGCATTGATCCCATGGACATGGACTTGGACCACGAAATCACCGGTCTTCGCGGCCAAGTCAAAAAGTTGAGAAATGACTTGAAACTTAGAAGGGAGAATTATTCTGGAGAAGAACTGAAGAATTATTATGTTGATCTTGTTGCTCAAGAGATAGGTACAGAAGTAAAGCAGCAGAAGGATTTTTTGGAAGAGCTGCAAACATTGATGACGAACGCTCAAGCCGGTGTTAAGAATAATATAAGAAGATTGAACAAGAGCATTGTTCGAAGTGGTTCAAACCATGTTGTTCATGTGTATACGCTTGGTCAAAGATGTTTAGAAAATGAGGTCACTGTTAGGGGTTATGATGCTCCAGTTGAGTTGAAAAAAGAAGCCCTCAGCTTTTATAGTGCCCTTTTCTATCTTGATCATGTGATAAATGAAGCGGAACGTACTAGATAA 702 0.4245 KFVKRRRKQTGGEGSKTIYLTRNVTEIPIGFDYLGLKLKGFPVLRHIPSLMSSNSYRGGSAYGDAAPFRSREGLSTRPAASSDEIQLRIDPMDMDLDHEITGLRGQVKKLRNDLKLRRENYSGEELKNYYVDLVAQEIGTEVKQQKDFLEELQTLMTNAQAGVKNNIRRLNKSIVRSGSNHVVHVYTLGQRCLENEVTVRGYDAPVELKKEALSFYSALFYLDHVINEAERTR* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3068 233 PANTHER GOLGI SNARE BET1-RELATED 59 112 IPR039897 GO:0015031|GO:0030173
Amo17g3068 233 CDD SNARE_Qc 134 172 - -
Amo17g3068 233 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 134 192 - -
Amo17g3068 233 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 59 112 - -
Amo17g3068 233 Gene3D - 132 173 - -
Amo17g3068 233 PANTHER GOLGI SNARE BET1-RELATED 134 192 IPR039897 GO:0015031|GO:0030173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3068 Amo-Chr17 134520028 134522160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3068 K08505 - cpap:110816711 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3068 17 134520028 134522160 Amo17g3068 17 134520028 134522160 ECH
Amo17g3068 17 134520028 134522160 Amo07g1804 07 53231533 53234331 hybridization
Amo17g3068 17 134520028 134522160 Amo17g3068 17 134520028 134522160 PCT
Amo07g1804 07 53231533 53234331 Amo17g3068 17 134520028 134522160 PCT
Amo17g3068 17 134520028 134522160 Amo07g1804 07 53231533 53234331 PCT