Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3052 ATGGGCCTCAAGTGCGCCACCTTAATCCTCTTTTTTACAATGTTTGTGGCAAGTAGCATTGCCATTGACCCATGCACCTCCAAGCCTGACGAAGCGGGCCTAACCGTGATACCCATCTTCGGCAAATGCTCACCATTTGACCCACCCAAGCCCGACTCATGGGCCCAAACGGTCATAAACATGGCATCCAAAGACCCAGCCCGTCTCAAGTACTTGTCCACACTAGTAGGCCAAAAGTCCGTTGTCTCCGCCCCAATCGCTTCGGGCCAGGCCTTCAACATTGGAAACTACGTGGTCCGTGTCAAGATCGGAACCCCGGGCCAGCTCATGTTCATGGTCTTGGACACCAGCACTGACGAGGCCTTCGTCCCGTGCTCTGGTTGCGTGGGCTGCTCCGCCACCACATTCTCCCCCAAAGACTCCACAAGTTACGGCCCATTGGACTGCTCAGTCCCGCAATGTGGCCAGGTCCGTGGGCTTCAGTGTCCCTCCACGGGCGCAGGCGCGTGTGCTTTCAACCAATCCTACGCGGGCTCCACATTTTCCGCCACGCTCGTCCAAGATTCACTCAGATTAGCCAGTGACGTAGTCCCGGGCTACTCATTCGGCTGCGTTAACGCAATCTCCGGCGAGTCCATTCCGGCCCAAGGGCTTCTGGGCCTGGGCCGTGGGCCTTTGTCTTTACTTTCGCAATCCGGCGGGCTCTACTCAGGTGTCTTCTCCTACTGCCTTCCCAGCTTCAAATCGTACTACTTCTCAGGGTCGCTCAAGCTTGGGCCCGTGGGGCAGCCCAAGAGTATCCGTACAACCCCACTTCTCCGAAACCCTCACAGGCCTTCCCTCTACTATGTGAACCTCACCGGAATAAGCGTGGGAAAGGTTCTCGTCCCTGTCCCCTCAGAGTACCTGGCTTTCGACCCGAACACCGGTTCCGGAACCATCATTGATTCCGGAACGGTGATAACCCGGTTCGTTGAGCCGGTGTACAATGCGGTGAGAGACGAGTTCAGGAAGCAGGTTGGTGGAACGTTCTCGAGCCTGGGAGCGTTTGACACGTGTTTCGTGAAGACGTACGAGAACTTGGCGCCAACGGTGACGCTTCACTTCACGGGGTTGGACCTGAAGCTTCCATTGGAGAACAGCTTGATACATAGTAGCGCTGGGTCGCTAGCTTGCCTTGCAATGGCGGCGGCTCCGAGTAATGTGAACTCTGTGCTGAACGTGATTGCCAACTTGCAGCAACAGAATCTTAGGATCTTGTTTGATACAATTAATAACAAGGTTGGGATAGCCCGTGAGCTTTGTAACTAA 1311 0.5545 MGLKCATLILFFTMFVASSIAIDPCTSKPDEAGLTVIPIFGKCSPFDPPKPDSWAQTVINMASKDPARLKYLSTLVGQKSVVSAPIASGQAFNIGNYVVRVKIGTPGQLMFMVLDTSTDEAFVPCSGCVGCSATTFSPKDSTSYGPLDCSVPQCGQVRGLQCPSTGAGACAFNQSYAGSTFSATLVQDSLRLASDVVPGYSFGCVNAISGESIPAQGLLGLGRGPLSLLSQSGGLYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNLTGISVGKVLVPVPSEYLAFDPNTGSGTIIDSGTVITRFVEPVYNAVRDEFRKQVGGTFSSLGAFDTCFVKTYENLAPTVTLHFTGLDLKLPLENSLIHSSAGSLACLAMAAAPSNVNSVLNVIANLQQQNLRILFDTINNKVGIARELCN* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3052 436 SUPERFAMILY Acid proteases 90 435 IPR021109 -
Amo17g3052 436 Gene3D Acid Proteases 74 259 IPR021109 -
Amo17g3052 436 Pfam Xylanase inhibitor N-terminal 97 259 IPR032861 -
Amo17g3052 436 ProSiteProfiles Peptidase family A1 domain profile. 97 431 IPR033121 -
Amo17g3052 436 PANTHER ASPARTYL PROTEASE-RELATED 6 436 IPR001461 GO:0004190|GO:0006508
Amo17g3052 436 Pfam Xylanase inhibitor C-terminal 282 431 IPR032799 -
Amo17g3052 436 Gene3D Acid Proteases 260 436 IPR021109 -
Amo17g3052 436 PANTHER ASPARTYL PROTEASE AED3 6 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3052 Amo-Chr17 133822705 133824407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3052 80 436 Miscellaneous Gene Families AT1G77480 26.515 5.39e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3052 - - gmx:100816307 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3052 17 133822705 133824407 Amo17g3052 17 133822705 133824407 ECH
Amo17g3052 17 133822705 133824407 Amo07g1832 07 54656568 54660180 hybridization