Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3010 ATGGAAGACACTGAGCAGAAACAAATGTTCCGCGACATCGTGCTCCAAGTCGTCATGGTCCTCTTCTTTGTAGTCACGTTCCTGGCCATGCACGGCATCCCTCAGAGGCTCCTCGCCTGGCTCCGCCTCCCAAGGGGACGCTCCGTCCGAGCCAAGCGCCACTTCGTCCGCAGCGCTCAGCTCCTCGCTGAAGCCCGAACCGCCAAGAAGAGCCGATCCTCCAGCTTGAATTCGCTCGCAAACGAAGCCCTAACCGAAGCAGATCGAGCGATCGCGCTCAATCCAAGGGATGCAGCTTCGTACCTACTCAAAGCAATGATCCTCGATCTGCAAGGGTTCCGGACCTCGGCGCTCGATGCAGTCGACGCGGCGCTGTCGCCGCTGGCAGCAAAGTCGCTCGCCGCGGAGGAGAGGGGTGACGCGCTGGTTAAGCGAGCGGAGCTGAAGTTGGCAGTGAGCGAGCGAAGCGAAGGCCGAGTTGACTCGGCGGTTGCCGATTTGACCGAGTCGGTGAAGCTGAACCCGAAGAACGCGAGAGGATGGTGTCTGTTAGGGCAATGCTATGAGGAGAAGGAAATGGAGGACGAAGCGAAGAAGGCTTATAAAGAGGCTCTTGAATTGGAACCGAAGCTTAGTGTGGCTGAGGAAGCGCTCAAGAGGTTGAGTTCTTCATAG 675 0.5822 MEDTEQKQMFRDIVLQVVMVLFFVVTFLAMHGIPQRLLAWLRLPRGRSVRAKRHFVRSAQLLAEARTAKKSRSSSLNSLANEALTEADRAIALNPRDAASYLLKAMILDLQGFRTSALDAVDAALSPLAAKSLAAEERGDALVKRAELKLAVSERSEGRVDSAVADLTESVKLNPKNARGWCLLGQCYEEKEMEDEAKKAYKEALELEPKLSVAEEALKRLSSS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3010 224 Gene3D Tetratricopeptide repeat domain 31 142 IPR011990 GO:0005515
Amo17g3010 224 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 8 221 - -
Amo17g3010 224 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Amo17g3010 224 Gene3D Tetratricopeptide repeat domain 143 224 IPR011990 GO:0005515
Amo17g3010 224 PANTHER - 8 221 - -
Amo17g3010 224 Pfam Tetratricopeptide repeat 178 210 IPR001440 GO:0005515
Amo17g3010 224 SUPERFAMILY TPR-like 81 214 IPR011990 GO:0005515
Amo17g3010 224 SMART tpr_5 178 211 IPR019734 GO:0005515
Amo17g3010 224 SMART tpr_5 144 177 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3010 Amo-Chr17 133154516 133156291 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3010 - - gmx:100799725 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3010 17 133154516 133156291 Amo17g3010 17 133154516 133156291 ECH
Amo17g3010 17 133154516 133156291 Amo07g1858 07 55643681 55644986 hybridization
Amo17g3010 17 133154516 133156291 Amo17g3010 17 133154516 133156291 PCT
Amo07g1858 07 55643681 55644986 Amo17g3010 17 133154516 133156291 PCT