Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1858 ATGGACAGCAACAAAGACTCATCCGTCAACGACGTCGTTTTACAGATCCTTCTCGTCGTCCTTATGGCCTTCTCCTTCTACTTCATTCACGACGCCCCAAAGAAGCTTTTCTCCACTCTCCGAAACCGCAACCAGGCCCACGTCCAGGCCAATCACCACTTTGTCCGCGGGGCCCAGATCCTCGCCAAGGCCCGGGCATCCCCTTCCCGATCCTCAGCCTCCTCCCTCGCCAAACAGGCCCAGGACGAGGCCCGCCAGGCCATTGCCCTCGACCCTACCGACGCCGCCGCCCATCTCCTCATCGCTCTCGCCCTCGACCTCCGCGGCCTCAGCGCCGCCGCGATCGATTCCCTCGACGCCGCGTTGTCCCCCGCCTTGGCCCGGTCGCTCAGTGACGGCGAGAGGGCCGACGCGCTGGTGAAGCGGGCCGAGCTGAGGATGACGATGGGCCCGGGCCAGCGAGGGCGGGCTGATCCCGCGATGGCGGATCTGCAGGAGGCCCTGAGGATTAGCCCGAAGAACGCGAAGGCGTTGTTTCTGTTGGGAAAGTACTATGAAGGAAAGAAAATGGAGAAAGAAGCTATTGAGGCTTACATGGAGGCTCTGAAGGCGGAGCCACAGTTGCGTAAAGCTCAAGAAGCTCTTCAGAGGTTAGGGTCTTAG 663 0.6154 MDSNKDSSVNDVVLQILLVVLMAFSFYFIHDAPKKLFSTLRNRNQAHVQANHHFVRGAQILAKARASPSRSSASSLAKQAQDEARQAIALDPTDAAAHLLIALALDLRGLSAAAIDSLDAALSPALARSLSDGERADALVKRAELRMTMGPGQRGRADPAMADLQEALRISPKNAKALFLLGKYYEGKKMEKEAIEAYMEALKAEPQLRKAQEALQRLGS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1858 220 SMART tpr_5 136 174 IPR019734 GO:0005515
Amo07g1858 220 SMART tpr_5 175 208 IPR019734 GO:0005515
Amo07g1858 220 SMART tpr_5 95 130 IPR019734 GO:0005515
Amo07g1858 220 Pfam Tetratricopeptide repeat 175 207 IPR019734 GO:0005515
Amo07g1858 220 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Amo07g1858 220 Gene3D Tetratricopeptide repeat domain 129 219 IPR011990 GO:0005515
Amo07g1858 220 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 9 217 - -
Amo07g1858 220 PANTHER - 9 217 - -
Amo07g1858 220 SUPERFAMILY TPR-like 78 214 IPR011990 GO:0005515
Amo07g1858 220 Coils Coil 185 205 - -
Amo07g1858 220 Gene3D Tetratricopeptide repeat domain 31 128 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1858 Amo-Chr7 55643681 55644986 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1858 - - gmx:100809739 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3010 17 133154516 133156291 Amo07g1858 07 55643681 55644986 hybridization
Amo07g1858 07 55643681 55644986 Amo17g3010 17 133154516 133156291 PCT